Cargando…
Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review
Glioblastoma (GBM) is a common and deadly brain tumor with late diagnoses and poor prognoses. Machine learning (ML) is an emerging tool that can create highly accurate diagnostic and prognostic prediction models. This paper aimed to systematically search the literature on ML for GBM metabolism and a...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958885/ https://www.ncbi.nlm.nih.gov/pubmed/36837779 http://dx.doi.org/10.3390/metabo13020161 |
_version_ | 1784895135834701824 |
---|---|
author | Neil, Zachery D. Pierzchajlo, Noah Boyett, Candler Little, Olivia Kuo, Cathleen C. Brown, Nolan J. Gendreau, Julian |
author_facet | Neil, Zachery D. Pierzchajlo, Noah Boyett, Candler Little, Olivia Kuo, Cathleen C. Brown, Nolan J. Gendreau, Julian |
author_sort | Neil, Zachery D. |
collection | PubMed |
description | Glioblastoma (GBM) is a common and deadly brain tumor with late diagnoses and poor prognoses. Machine learning (ML) is an emerging tool that can create highly accurate diagnostic and prognostic prediction models. This paper aimed to systematically search the literature on ML for GBM metabolism and assess recent advancements. A literature search was performed using predetermined search terms. Articles describing the use of an ML algorithm for GBM metabolism were included. Ten studies met the inclusion criteria for analysis: diagnostic (n = 3, 30%), prognostic (n = 6, 60%), or both (n = 1, 10%). Most studies analyzed data from multiple databases, while 50% (n = 5) included additional original samples. At least 2536 data samples were run through an ML algorithm. Twenty-seven ML algorithms were recorded with a mean of 2.8 algorithms per study. Algorithms were supervised (n = 24, 89%), unsupervised (n = 3, 11%), continuous (n = 19, 70%), or categorical (n = 8, 30%). The mean reported accuracy and AUC of ROC were 95.63% and 0.779, respectively. One hundred six metabolic markers were identified, but only EMP3 was reported in multiple studies. Many studies have identified potential biomarkers for GBM diagnosis and prognostication. These algorithms show promise; however, a consensus on even a handful of biomarkers has not yet been made. |
format | Online Article Text |
id | pubmed-9958885 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99588852023-02-26 Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review Neil, Zachery D. Pierzchajlo, Noah Boyett, Candler Little, Olivia Kuo, Cathleen C. Brown, Nolan J. Gendreau, Julian Metabolites Systematic Review Glioblastoma (GBM) is a common and deadly brain tumor with late diagnoses and poor prognoses. Machine learning (ML) is an emerging tool that can create highly accurate diagnostic and prognostic prediction models. This paper aimed to systematically search the literature on ML for GBM metabolism and assess recent advancements. A literature search was performed using predetermined search terms. Articles describing the use of an ML algorithm for GBM metabolism were included. Ten studies met the inclusion criteria for analysis: diagnostic (n = 3, 30%), prognostic (n = 6, 60%), or both (n = 1, 10%). Most studies analyzed data from multiple databases, while 50% (n = 5) included additional original samples. At least 2536 data samples were run through an ML algorithm. Twenty-seven ML algorithms were recorded with a mean of 2.8 algorithms per study. Algorithms were supervised (n = 24, 89%), unsupervised (n = 3, 11%), continuous (n = 19, 70%), or categorical (n = 8, 30%). The mean reported accuracy and AUC of ROC were 95.63% and 0.779, respectively. One hundred six metabolic markers were identified, but only EMP3 was reported in multiple studies. Many studies have identified potential biomarkers for GBM diagnosis and prognostication. These algorithms show promise; however, a consensus on even a handful of biomarkers has not yet been made. MDPI 2023-01-21 /pmc/articles/PMC9958885/ /pubmed/36837779 http://dx.doi.org/10.3390/metabo13020161 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Systematic Review Neil, Zachery D. Pierzchajlo, Noah Boyett, Candler Little, Olivia Kuo, Cathleen C. Brown, Nolan J. Gendreau, Julian Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title | Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title_full | Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title_fullStr | Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title_full_unstemmed | Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title_short | Assessing Metabolic Markers in Glioblastoma Using Machine Learning: A Systematic Review |
title_sort | assessing metabolic markers in glioblastoma using machine learning: a systematic review |
topic | Systematic Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9958885/ https://www.ncbi.nlm.nih.gov/pubmed/36837779 http://dx.doi.org/10.3390/metabo13020161 |
work_keys_str_mv | AT neilzacheryd assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT pierzchajlonoah assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT boyettcandler assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT littleolivia assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT kuocathleenc assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT brownnolanj assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview AT gendreaujulian assessingmetabolicmarkersinglioblastomausingmachinelearningasystematicreview |