Cargando…

Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation

Glioblastoma (GBM) is the most common primary malignant intracranial tumor with a poor prognosis. Ferroptosis is a newly discovered, iron-dependent, regulated cell death, and recent studies suggest its close correlation to GBM. The transcriptome and clinical data were obtained for patients diagnosed...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Wenlin, Lei, Chuxiang, Wang, Yuekun, Guo, Dan, Zhang, Sumei, Wang, Xiaoxi, Zhang, Zixin, Wang, Yu, Ma, Wenbin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9960289/
https://www.ncbi.nlm.nih.gov/pubmed/36835877
http://dx.doi.org/10.3390/jcm12041341
_version_ 1784895478007070720
author Chen, Wenlin
Lei, Chuxiang
Wang, Yuekun
Guo, Dan
Zhang, Sumei
Wang, Xiaoxi
Zhang, Zixin
Wang, Yu
Ma, Wenbin
author_facet Chen, Wenlin
Lei, Chuxiang
Wang, Yuekun
Guo, Dan
Zhang, Sumei
Wang, Xiaoxi
Zhang, Zixin
Wang, Yu
Ma, Wenbin
author_sort Chen, Wenlin
collection PubMed
description Glioblastoma (GBM) is the most common primary malignant intracranial tumor with a poor prognosis. Ferroptosis is a newly discovered, iron-dependent, regulated cell death, and recent studies suggest its close correlation to GBM. The transcriptome and clinical data were obtained for patients diagnosed with GBM from TCGA, GEO, and CGGA. Ferroptosis-related genes were identified, and a risk score model was constructed using Lasso regression analyses. Survival was evaluated by univariate or multivariate Cox regressions and Kaplan–Meier analyses, and further analyses were performed between the high- and low-risk groups. There were 45 ferroptosis-related different expressed genes between GBM and normal brain tissues. The prognostic risk score model was based on four favorable genes, CRYAB, ZEB1, ATP5MC3, and NCOA4, and four unfavorable genes, ALOX5, CHAC1, STEAP3, and MT1G. A significant difference in OS between high- and low-risk groups was observed in both the training cohort (p < 0.001) and the validation cohorts (p = 0.029 and 0.037). Enrichment analysis of pathways and immune cells and functioning was conducted between the two risk groups. A novel prognostic model for GBM patients was developed based on eight ferroptosis-related genes, suggesting a potential prediction effect of the risk score model in GBM.
format Online
Article
Text
id pubmed-9960289
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-99602892023-02-26 Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation Chen, Wenlin Lei, Chuxiang Wang, Yuekun Guo, Dan Zhang, Sumei Wang, Xiaoxi Zhang, Zixin Wang, Yu Ma, Wenbin J Clin Med Article Glioblastoma (GBM) is the most common primary malignant intracranial tumor with a poor prognosis. Ferroptosis is a newly discovered, iron-dependent, regulated cell death, and recent studies suggest its close correlation to GBM. The transcriptome and clinical data were obtained for patients diagnosed with GBM from TCGA, GEO, and CGGA. Ferroptosis-related genes were identified, and a risk score model was constructed using Lasso regression analyses. Survival was evaluated by univariate or multivariate Cox regressions and Kaplan–Meier analyses, and further analyses were performed between the high- and low-risk groups. There were 45 ferroptosis-related different expressed genes between GBM and normal brain tissues. The prognostic risk score model was based on four favorable genes, CRYAB, ZEB1, ATP5MC3, and NCOA4, and four unfavorable genes, ALOX5, CHAC1, STEAP3, and MT1G. A significant difference in OS between high- and low-risk groups was observed in both the training cohort (p < 0.001) and the validation cohorts (p = 0.029 and 0.037). Enrichment analysis of pathways and immune cells and functioning was conducted between the two risk groups. A novel prognostic model for GBM patients was developed based on eight ferroptosis-related genes, suggesting a potential prediction effect of the risk score model in GBM. MDPI 2023-02-08 /pmc/articles/PMC9960289/ /pubmed/36835877 http://dx.doi.org/10.3390/jcm12041341 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Wenlin
Lei, Chuxiang
Wang, Yuekun
Guo, Dan
Zhang, Sumei
Wang, Xiaoxi
Zhang, Zixin
Wang, Yu
Ma, Wenbin
Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title_full Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title_fullStr Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title_full_unstemmed Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title_short Prognostic Prediction Model for Glioblastoma: A Ferroptosis-Related Gene Prediction Model and Independent External Validation
title_sort prognostic prediction model for glioblastoma: a ferroptosis-related gene prediction model and independent external validation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9960289/
https://www.ncbi.nlm.nih.gov/pubmed/36835877
http://dx.doi.org/10.3390/jcm12041341
work_keys_str_mv AT chenwenlin prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT leichuxiang prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT wangyuekun prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT guodan prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT zhangsumei prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT wangxiaoxi prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT zhangzixin prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT wangyu prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation
AT mawenbin prognosticpredictionmodelforglioblastomaaferroptosisrelatedgenepredictionmodelandindependentexternalvalidation