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Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi

To explore the effect of associated bacteria on the low-temperature adaptability of pinewood nematodes (PWNs), transcriptome sequencing (RNA-seq) of PWN AH23 treated with the associated bacterial strain Bacillus cereus GD1 was carried out with reference to the whole PWN genome. Bioinformatic softwar...

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Autores principales: Yuan, Yuchao, Pan, Min, Shen, Luyang, Liu, Yuqian, Zhu, Qinping, Hong, Jingxin, Ye, Jianren, Tan, Jiajin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9961929/
https://www.ncbi.nlm.nih.gov/pubmed/36838395
http://dx.doi.org/10.3390/microorganisms11020430
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author Yuan, Yuchao
Pan, Min
Shen, Luyang
Liu, Yuqian
Zhu, Qinping
Hong, Jingxin
Ye, Jianren
Tan, Jiajin
author_facet Yuan, Yuchao
Pan, Min
Shen, Luyang
Liu, Yuqian
Zhu, Qinping
Hong, Jingxin
Ye, Jianren
Tan, Jiajin
author_sort Yuan, Yuchao
collection PubMed
description To explore the effect of associated bacteria on the low-temperature adaptability of pinewood nematodes (PWNs), transcriptome sequencing (RNA-seq) of PWN AH23 treated with the associated bacterial strain Bacillus cereus GD1 was carried out with reference to the whole PWN genome. Bioinformatic software was utilized to analyze the differentially expressed genes (DEGs). This study was based on the analysis of DEGs to verify the function of daf-11 by RNAi. The results showed that there were 439 DEGs between AH23 treated with GD1 and those treated with ddH(2)O at 10 °C. There were 207 pathways annotated in the KEGG database and 48 terms annotated in the GO database. It was found that after RNAi of daf-11, the survival rate of PWNs decreased significantly at 10 °C, and fecundity decreased significantly at 15 °C. It can be concluded that the associated bacteria GD1 can enhance the expression of genes related to PWN low-temperature adaptation and improve their adaptability to low temperatures.
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spelling pubmed-99619292023-02-26 Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi Yuan, Yuchao Pan, Min Shen, Luyang Liu, Yuqian Zhu, Qinping Hong, Jingxin Ye, Jianren Tan, Jiajin Microorganisms Article To explore the effect of associated bacteria on the low-temperature adaptability of pinewood nematodes (PWNs), transcriptome sequencing (RNA-seq) of PWN AH23 treated with the associated bacterial strain Bacillus cereus GD1 was carried out with reference to the whole PWN genome. Bioinformatic software was utilized to analyze the differentially expressed genes (DEGs). This study was based on the analysis of DEGs to verify the function of daf-11 by RNAi. The results showed that there were 439 DEGs between AH23 treated with GD1 and those treated with ddH(2)O at 10 °C. There were 207 pathways annotated in the KEGG database and 48 terms annotated in the GO database. It was found that after RNAi of daf-11, the survival rate of PWNs decreased significantly at 10 °C, and fecundity decreased significantly at 15 °C. It can be concluded that the associated bacteria GD1 can enhance the expression of genes related to PWN low-temperature adaptation and improve their adaptability to low temperatures. MDPI 2023-02-08 /pmc/articles/PMC9961929/ /pubmed/36838395 http://dx.doi.org/10.3390/microorganisms11020430 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yuan, Yuchao
Pan, Min
Shen, Luyang
Liu, Yuqian
Zhu, Qinping
Hong, Jingxin
Ye, Jianren
Tan, Jiajin
Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title_full Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title_fullStr Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title_full_unstemmed Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title_short Effect of Associated Bacteria GD1 on the Low-Temperature Adaptability of Bursaphelenchus xylophilus Based on RNA-Seq and RNAi
title_sort effect of associated bacteria gd1 on the low-temperature adaptability of bursaphelenchus xylophilus based on rna-seq and rnai
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9961929/
https://www.ncbi.nlm.nih.gov/pubmed/36838395
http://dx.doi.org/10.3390/microorganisms11020430
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