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Leaf-Counting in Monocot Plants Using Deep Regression Models

Leaf numbers are vital in estimating the yield of crops. Traditional manual leaf-counting is tedious, costly, and an enormous job. Recent convolutional neural network-based approaches achieve promising results for rosette plants. However, there is a lack of effective solutions to tackle leaf countin...

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Autores principales: Xie, Xinyan, Ge, Yufeng, Walia, Harkamal, Yang, Jinliang, Yu, Hongfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9962473/
https://www.ncbi.nlm.nih.gov/pubmed/36850487
http://dx.doi.org/10.3390/s23041890
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author Xie, Xinyan
Ge, Yufeng
Walia, Harkamal
Yang, Jinliang
Yu, Hongfeng
author_facet Xie, Xinyan
Ge, Yufeng
Walia, Harkamal
Yang, Jinliang
Yu, Hongfeng
author_sort Xie, Xinyan
collection PubMed
description Leaf numbers are vital in estimating the yield of crops. Traditional manual leaf-counting is tedious, costly, and an enormous job. Recent convolutional neural network-based approaches achieve promising results for rosette plants. However, there is a lack of effective solutions to tackle leaf counting for monocot plants, such as sorghum and maize. The existing approaches often require substantial training datasets and annotations, thus incurring significant overheads for labeling. Moreover, these approaches can easily fail when leaf structures are occluded in images. To address these issues, we present a new deep neural network-based method that does not require any effort to label leaf structures explicitly and achieves superior performance even with severe leaf occlusions in images. Our method extracts leaf skeletons to gain more topological information and applies augmentation to enhance structural variety in the original images. Then, we feed the combination of original images, derived skeletons, and augmentations into a regression model, transferred from Inception-Resnet-V2, for leaf-counting. We find that leaf tips are important in our regression model through an input modification method and a Grad-CAM method. The superiority of the proposed method is validated via comparison with the existing approaches conducted on a similar dataset. The results show that our method does not only improve the accuracy of leaf-counting, with overlaps and occlusions, but also lower the training cost, with fewer annotations compared to the previous state-of-the-art approaches.The robustness of the proposed method against the noise effect is also verified by removing the environmental noises during the image preprocessing and reducing the effect of the noises introduced by skeletonization, with satisfactory outcomes.
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spelling pubmed-99624732023-02-26 Leaf-Counting in Monocot Plants Using Deep Regression Models Xie, Xinyan Ge, Yufeng Walia, Harkamal Yang, Jinliang Yu, Hongfeng Sensors (Basel) Article Leaf numbers are vital in estimating the yield of crops. Traditional manual leaf-counting is tedious, costly, and an enormous job. Recent convolutional neural network-based approaches achieve promising results for rosette plants. However, there is a lack of effective solutions to tackle leaf counting for monocot plants, such as sorghum and maize. The existing approaches often require substantial training datasets and annotations, thus incurring significant overheads for labeling. Moreover, these approaches can easily fail when leaf structures are occluded in images. To address these issues, we present a new deep neural network-based method that does not require any effort to label leaf structures explicitly and achieves superior performance even with severe leaf occlusions in images. Our method extracts leaf skeletons to gain more topological information and applies augmentation to enhance structural variety in the original images. Then, we feed the combination of original images, derived skeletons, and augmentations into a regression model, transferred from Inception-Resnet-V2, for leaf-counting. We find that leaf tips are important in our regression model through an input modification method and a Grad-CAM method. The superiority of the proposed method is validated via comparison with the existing approaches conducted on a similar dataset. The results show that our method does not only improve the accuracy of leaf-counting, with overlaps and occlusions, but also lower the training cost, with fewer annotations compared to the previous state-of-the-art approaches.The robustness of the proposed method against the noise effect is also verified by removing the environmental noises during the image preprocessing and reducing the effect of the noises introduced by skeletonization, with satisfactory outcomes. MDPI 2023-02-08 /pmc/articles/PMC9962473/ /pubmed/36850487 http://dx.doi.org/10.3390/s23041890 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xie, Xinyan
Ge, Yufeng
Walia, Harkamal
Yang, Jinliang
Yu, Hongfeng
Leaf-Counting in Monocot Plants Using Deep Regression Models
title Leaf-Counting in Monocot Plants Using Deep Regression Models
title_full Leaf-Counting in Monocot Plants Using Deep Regression Models
title_fullStr Leaf-Counting in Monocot Plants Using Deep Regression Models
title_full_unstemmed Leaf-Counting in Monocot Plants Using Deep Regression Models
title_short Leaf-Counting in Monocot Plants Using Deep Regression Models
title_sort leaf-counting in monocot plants using deep regression models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9962473/
https://www.ncbi.nlm.nih.gov/pubmed/36850487
http://dx.doi.org/10.3390/s23041890
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