Cargando…

Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment

Hempseed is a nutrient-rich natural resource, and high levels of hempseed oil accumulate within hemp seeds, consisting primarily of different triglycerides. Members of the diacylglycerol acyltransferase (DGAT) enzyme family play critical roles in catalyzing triacylglycerol biosynthesis in plants, of...

Descripción completa

Detalles Bibliográficos
Autores principales: Yan, Bowei, Chang, Chuanyi, Gu, Yingnan, Zheng, Nan, Fang, Yuyan, Zhang, Ming, Wang, Guijiang, Zhang, Liguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9963917/
https://www.ncbi.nlm.nih.gov/pubmed/36835488
http://dx.doi.org/10.3390/ijms24044078
_version_ 1784896373768847360
author Yan, Bowei
Chang, Chuanyi
Gu, Yingnan
Zheng, Nan
Fang, Yuyan
Zhang, Ming
Wang, Guijiang
Zhang, Liguo
author_facet Yan, Bowei
Chang, Chuanyi
Gu, Yingnan
Zheng, Nan
Fang, Yuyan
Zhang, Ming
Wang, Guijiang
Zhang, Liguo
author_sort Yan, Bowei
collection PubMed
description Hempseed is a nutrient-rich natural resource, and high levels of hempseed oil accumulate within hemp seeds, consisting primarily of different triglycerides. Members of the diacylglycerol acyltransferase (DGAT) enzyme family play critical roles in catalyzing triacylglycerol biosynthesis in plants, often governing the rate-limiting step in this process. As such, this study was designed to characterize the Cannabis sativa DGAT (CsDGAT) gene family in detail. Genomic analyses of the C. sativa revealed 10 candidate DGAT genes that were classified into four families (DGAT1, DGAT2, DGAT3, WS/DGAT) based on the features of different isoforms. Members of the CsDGAT family were found to be associated with large numbers of cis-acting promoter elements, including plant response elements, plant hormone response elements, light response elements, and stress response elements, suggesting roles for these genes in key processes such as development, environmental adaptation, and abiotic stress responses. Profiling of these genes in various tissues and varieties revealed varying spatial patterns of CsDGAT expression dynamics and differences in expression among C. sativa varieties, suggesting that the members of this gene family likely play distinct functional regulatory functions CsDGAT genes were upregulated in response to cold stress, and significant differences in the mode of regulation were observed when comparing roots and leaves, indicating that CsDGAT genes may play positive roles as regulators of cold responses in hemp while also playing distinct roles in shaping the responses of different parts of hemp seedlings to cold exposure. These data provide a robust basis for further functional studies of this gene family, supporting future efforts to screen the significance of CsDGAT candidate genes to validate their functions to improve hempseed oil composition.
format Online
Article
Text
id pubmed-9963917
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-99639172023-02-26 Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment Yan, Bowei Chang, Chuanyi Gu, Yingnan Zheng, Nan Fang, Yuyan Zhang, Ming Wang, Guijiang Zhang, Liguo Int J Mol Sci Article Hempseed is a nutrient-rich natural resource, and high levels of hempseed oil accumulate within hemp seeds, consisting primarily of different triglycerides. Members of the diacylglycerol acyltransferase (DGAT) enzyme family play critical roles in catalyzing triacylglycerol biosynthesis in plants, often governing the rate-limiting step in this process. As such, this study was designed to characterize the Cannabis sativa DGAT (CsDGAT) gene family in detail. Genomic analyses of the C. sativa revealed 10 candidate DGAT genes that were classified into four families (DGAT1, DGAT2, DGAT3, WS/DGAT) based on the features of different isoforms. Members of the CsDGAT family were found to be associated with large numbers of cis-acting promoter elements, including plant response elements, plant hormone response elements, light response elements, and stress response elements, suggesting roles for these genes in key processes such as development, environmental adaptation, and abiotic stress responses. Profiling of these genes in various tissues and varieties revealed varying spatial patterns of CsDGAT expression dynamics and differences in expression among C. sativa varieties, suggesting that the members of this gene family likely play distinct functional regulatory functions CsDGAT genes were upregulated in response to cold stress, and significant differences in the mode of regulation were observed when comparing roots and leaves, indicating that CsDGAT genes may play positive roles as regulators of cold responses in hemp while also playing distinct roles in shaping the responses of different parts of hemp seedlings to cold exposure. These data provide a robust basis for further functional studies of this gene family, supporting future efforts to screen the significance of CsDGAT candidate genes to validate their functions to improve hempseed oil composition. MDPI 2023-02-17 /pmc/articles/PMC9963917/ /pubmed/36835488 http://dx.doi.org/10.3390/ijms24044078 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yan, Bowei
Chang, Chuanyi
Gu, Yingnan
Zheng, Nan
Fang, Yuyan
Zhang, Ming
Wang, Guijiang
Zhang, Liguo
Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title_full Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title_fullStr Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title_full_unstemmed Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title_short Genome-Wide Identification, Classification, and Expression Analyses of the CsDGAT Gene Family in Cannabis sativa L. and Their Response to Cold Treatment
title_sort genome-wide identification, classification, and expression analyses of the csdgat gene family in cannabis sativa l. and their response to cold treatment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9963917/
https://www.ncbi.nlm.nih.gov/pubmed/36835488
http://dx.doi.org/10.3390/ijms24044078
work_keys_str_mv AT yanbowei genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT changchuanyi genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT guyingnan genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT zhengnan genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT fangyuyan genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT zhangming genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT wangguijiang genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment
AT zhangliguo genomewideidentificationclassificationandexpressionanalysesofthecsdgatgenefamilyincannabissativalandtheirresponsetocoldtreatment