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Urea Decomposition Mechanism by Dinuclear Nickel Complexes

Urease is an enzyme containing a dinuclear nickel active center responsible for the hydrolysis of urea into carbon dioxide and ammonia. Interestingly, inorganic models of urease are unable to mimic its mechanism despite their similarities to the enzyme active site. The reason behind the discrepancy...

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Autores principales: Martins, Christian O., Sebastiany, Leticia K., Lopez-Castillo, Alejandro, Freitas, Rafael S., Andrade, Leandro H., Toma, Henrique E., Netto, Caterina G. C. Marques
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9964345/
https://www.ncbi.nlm.nih.gov/pubmed/36838646
http://dx.doi.org/10.3390/molecules28041659
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author Martins, Christian O.
Sebastiany, Leticia K.
Lopez-Castillo, Alejandro
Freitas, Rafael S.
Andrade, Leandro H.
Toma, Henrique E.
Netto, Caterina G. C. Marques
author_facet Martins, Christian O.
Sebastiany, Leticia K.
Lopez-Castillo, Alejandro
Freitas, Rafael S.
Andrade, Leandro H.
Toma, Henrique E.
Netto, Caterina G. C. Marques
author_sort Martins, Christian O.
collection PubMed
description Urease is an enzyme containing a dinuclear nickel active center responsible for the hydrolysis of urea into carbon dioxide and ammonia. Interestingly, inorganic models of urease are unable to mimic its mechanism despite their similarities to the enzyme active site. The reason behind the discrepancy in urea decomposition mechanisms between inorganic models and urease is still unknown. To evaluate this factor, we synthesized two bis-nickel complexes, [Ni(2)L(OAc)] (1) and [Ni(2)L(Cl)(Et(3)N)(2)] (2), based on the Trost bis-Pro-Phenol ligand (L) and encompassing different ligand labilities with coordination geometries similar to the active site of jack bean urease. Both mimetic complexes produced ammonia from urea, (1) and (2), were ten- and four-fold slower than urease, respectively. The presence and importance of several reaction intermediates were evaluated both experimentally and theoretically, indicating the aquo intermediate as a key intermediate, coordinating urea in an outer-sphere manner. Both complexes produced isocyanate, revealing an activated water molecule acting as a base. In addition, the reaction with different substrates indicated the biomimetic complexes were able to hydrolyze isocyanate. Thus, our results indicate that the formation of an outer-sphere complex in the urease analogues might be the reason urease performs a different mechanism.
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spelling pubmed-99643452023-02-26 Urea Decomposition Mechanism by Dinuclear Nickel Complexes Martins, Christian O. Sebastiany, Leticia K. Lopez-Castillo, Alejandro Freitas, Rafael S. Andrade, Leandro H. Toma, Henrique E. Netto, Caterina G. C. Marques Molecules Article Urease is an enzyme containing a dinuclear nickel active center responsible for the hydrolysis of urea into carbon dioxide and ammonia. Interestingly, inorganic models of urease are unable to mimic its mechanism despite their similarities to the enzyme active site. The reason behind the discrepancy in urea decomposition mechanisms between inorganic models and urease is still unknown. To evaluate this factor, we synthesized two bis-nickel complexes, [Ni(2)L(OAc)] (1) and [Ni(2)L(Cl)(Et(3)N)(2)] (2), based on the Trost bis-Pro-Phenol ligand (L) and encompassing different ligand labilities with coordination geometries similar to the active site of jack bean urease. Both mimetic complexes produced ammonia from urea, (1) and (2), were ten- and four-fold slower than urease, respectively. The presence and importance of several reaction intermediates were evaluated both experimentally and theoretically, indicating the aquo intermediate as a key intermediate, coordinating urea in an outer-sphere manner. Both complexes produced isocyanate, revealing an activated water molecule acting as a base. In addition, the reaction with different substrates indicated the biomimetic complexes were able to hydrolyze isocyanate. Thus, our results indicate that the formation of an outer-sphere complex in the urease analogues might be the reason urease performs a different mechanism. MDPI 2023-02-09 /pmc/articles/PMC9964345/ /pubmed/36838646 http://dx.doi.org/10.3390/molecules28041659 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Martins, Christian O.
Sebastiany, Leticia K.
Lopez-Castillo, Alejandro
Freitas, Rafael S.
Andrade, Leandro H.
Toma, Henrique E.
Netto, Caterina G. C. Marques
Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title_full Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title_fullStr Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title_full_unstemmed Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title_short Urea Decomposition Mechanism by Dinuclear Nickel Complexes
title_sort urea decomposition mechanism by dinuclear nickel complexes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9964345/
https://www.ncbi.nlm.nih.gov/pubmed/36838646
http://dx.doi.org/10.3390/molecules28041659
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