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Classifying Circumnutation in Pea Plants via Supervised Machine Learning

Climbing plants require an external support to grow vertically and enhance light acquisition. Climbers that find a suitable support demonstrate greater performance and fitness than those that remain prostrate. Support search is characterized by oscillatory movements (i.e., circumnutation), in which...

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Autores principales: Wang, Qiuran, Barbariol, Tommaso, Susto, Gian Antonio, Bonato, Bianca, Guerra, Silvia, Castiello, Umberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965265/
https://www.ncbi.nlm.nih.gov/pubmed/36840313
http://dx.doi.org/10.3390/plants12040965
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author Wang, Qiuran
Barbariol, Tommaso
Susto, Gian Antonio
Bonato, Bianca
Guerra, Silvia
Castiello, Umberto
author_facet Wang, Qiuran
Barbariol, Tommaso
Susto, Gian Antonio
Bonato, Bianca
Guerra, Silvia
Castiello, Umberto
author_sort Wang, Qiuran
collection PubMed
description Climbing plants require an external support to grow vertically and enhance light acquisition. Climbers that find a suitable support demonstrate greater performance and fitness than those that remain prostrate. Support search is characterized by oscillatory movements (i.e., circumnutation), in which plants rotate around a central axis during their growth. Numerous studies have elucidated the mechanistic details of circumnutation, but how this phenomenon is controlled during support searching remains unclear. To fill this gap, here we tested whether simulation-based machine learning methods can capture differences in movement patterns nested in actual kinematical data. We compared machine learning classifiers with the aim of generating models that learn to discriminate between circumnutation patterns related to the presence/absence of a support in the environment. Results indicate that there is a difference in the pattern of circumnutation, depending on the presence of a support, that can be learned and classified rather accurately. We also identify distinctive kinematic features at the level of the junction underneath the tendrils that seems to be a superior indicator for discerning the presence/absence of the support by the plant. Overall, machine learning approaches appear to be powerful tools for understanding the movement of plants.
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spelling pubmed-99652652023-02-26 Classifying Circumnutation in Pea Plants via Supervised Machine Learning Wang, Qiuran Barbariol, Tommaso Susto, Gian Antonio Bonato, Bianca Guerra, Silvia Castiello, Umberto Plants (Basel) Article Climbing plants require an external support to grow vertically and enhance light acquisition. Climbers that find a suitable support demonstrate greater performance and fitness than those that remain prostrate. Support search is characterized by oscillatory movements (i.e., circumnutation), in which plants rotate around a central axis during their growth. Numerous studies have elucidated the mechanistic details of circumnutation, but how this phenomenon is controlled during support searching remains unclear. To fill this gap, here we tested whether simulation-based machine learning methods can capture differences in movement patterns nested in actual kinematical data. We compared machine learning classifiers with the aim of generating models that learn to discriminate between circumnutation patterns related to the presence/absence of a support in the environment. Results indicate that there is a difference in the pattern of circumnutation, depending on the presence of a support, that can be learned and classified rather accurately. We also identify distinctive kinematic features at the level of the junction underneath the tendrils that seems to be a superior indicator for discerning the presence/absence of the support by the plant. Overall, machine learning approaches appear to be powerful tools for understanding the movement of plants. MDPI 2023-02-20 /pmc/articles/PMC9965265/ /pubmed/36840313 http://dx.doi.org/10.3390/plants12040965 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Qiuran
Barbariol, Tommaso
Susto, Gian Antonio
Bonato, Bianca
Guerra, Silvia
Castiello, Umberto
Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title_full Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title_fullStr Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title_full_unstemmed Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title_short Classifying Circumnutation in Pea Plants via Supervised Machine Learning
title_sort classifying circumnutation in pea plants via supervised machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965265/
https://www.ncbi.nlm.nih.gov/pubmed/36840313
http://dx.doi.org/10.3390/plants12040965
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