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Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation

The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to...

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Autores principales: Trac, Alice, Issaad, Célia, Beniddir, Mehdi A., Bellanger, Jean-Michel, Gallard, Jean-François, Buevich, Alexei V., Elyashberg, Mikhail E., Le Pogam, Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965508/
https://www.ncbi.nlm.nih.gov/pubmed/36838545
http://dx.doi.org/10.3390/molecules28041557
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author Trac, Alice
Issaad, Célia
Beniddir, Mehdi A.
Bellanger, Jean-Michel
Gallard, Jean-François
Buevich, Alexei V.
Elyashberg, Mikhail E.
Le Pogam, Pierre
author_facet Trac, Alice
Issaad, Célia
Beniddir, Mehdi A.
Bellanger, Jean-Michel
Gallard, Jean-François
Buevich, Alexei V.
Elyashberg, Mikhail E.
Le Pogam, Pierre
author_sort Trac, Alice
collection PubMed
description The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to its critically low H/C atom ratio. The structure of this new isolate, namely ominoxanthone (1), could not be solved from the interpretation of the usual set of 1D/2D NMR data that conveyed too limited information to afford a single, unambiguous structure. To remedy this, a Computer-Assisted Structure Elucidation (CASE) workflow was used to rank the different possible structure candidates consistent with our scarce spectroscopic data. DFT-based chemical shift calculations on a limited set of top-ranked structures further ascertained the determined structure for ominoxanthone. Although the determined scaffold of ominoxanthone is unprecedented as a natural product, a plausible biosynthetic scenario involving a precursor known from cortinariaceous sources and classical biogenetic reactions could be proposed.
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spelling pubmed-99655082023-02-26 Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation Trac, Alice Issaad, Célia Beniddir, Mehdi A. Bellanger, Jean-Michel Gallard, Jean-François Buevich, Alexei V. Elyashberg, Mikhail E. Le Pogam, Pierre Molecules Article The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to its critically low H/C atom ratio. The structure of this new isolate, namely ominoxanthone (1), could not be solved from the interpretation of the usual set of 1D/2D NMR data that conveyed too limited information to afford a single, unambiguous structure. To remedy this, a Computer-Assisted Structure Elucidation (CASE) workflow was used to rank the different possible structure candidates consistent with our scarce spectroscopic data. DFT-based chemical shift calculations on a limited set of top-ranked structures further ascertained the determined structure for ominoxanthone. Although the determined scaffold of ominoxanthone is unprecedented as a natural product, a plausible biosynthetic scenario involving a precursor known from cortinariaceous sources and classical biogenetic reactions could be proposed. MDPI 2023-02-06 /pmc/articles/PMC9965508/ /pubmed/36838545 http://dx.doi.org/10.3390/molecules28041557 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Trac, Alice
Issaad, Célia
Beniddir, Mehdi A.
Bellanger, Jean-Michel
Gallard, Jean-François
Buevich, Alexei V.
Elyashberg, Mikhail E.
Le Pogam, Pierre
Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title_full Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title_fullStr Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title_full_unstemmed Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title_short Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
title_sort ominoxanthone—the first xanthone linearly fused to a γ-lactone from cortinarius ominosus bidaud basidiomata. case- and dft-based structure elucidation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965508/
https://www.ncbi.nlm.nih.gov/pubmed/36838545
http://dx.doi.org/10.3390/molecules28041557
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