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Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965508/ https://www.ncbi.nlm.nih.gov/pubmed/36838545 http://dx.doi.org/10.3390/molecules28041557 |
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author | Trac, Alice Issaad, Célia Beniddir, Mehdi A. Bellanger, Jean-Michel Gallard, Jean-François Buevich, Alexei V. Elyashberg, Mikhail E. Le Pogam, Pierre |
author_facet | Trac, Alice Issaad, Célia Beniddir, Mehdi A. Bellanger, Jean-Michel Gallard, Jean-François Buevich, Alexei V. Elyashberg, Mikhail E. Le Pogam, Pierre |
author_sort | Trac, Alice |
collection | PubMed |
description | The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to its critically low H/C atom ratio. The structure of this new isolate, namely ominoxanthone (1), could not be solved from the interpretation of the usual set of 1D/2D NMR data that conveyed too limited information to afford a single, unambiguous structure. To remedy this, a Computer-Assisted Structure Elucidation (CASE) workflow was used to rank the different possible structure candidates consistent with our scarce spectroscopic data. DFT-based chemical shift calculations on a limited set of top-ranked structures further ascertained the determined structure for ominoxanthone. Although the determined scaffold of ominoxanthone is unprecedented as a natural product, a plausible biosynthetic scenario involving a precursor known from cortinariaceous sources and classical biogenetic reactions could be proposed. |
format | Online Article Text |
id | pubmed-9965508 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99655082023-02-26 Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation Trac, Alice Issaad, Célia Beniddir, Mehdi A. Bellanger, Jean-Michel Gallard, Jean-François Buevich, Alexei V. Elyashberg, Mikhail E. Le Pogam, Pierre Molecules Article The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C(17)H(10)O(8), indicated that a challenging structure elucidation lay ahead, owing to its critically low H/C atom ratio. The structure of this new isolate, namely ominoxanthone (1), could not be solved from the interpretation of the usual set of 1D/2D NMR data that conveyed too limited information to afford a single, unambiguous structure. To remedy this, a Computer-Assisted Structure Elucidation (CASE) workflow was used to rank the different possible structure candidates consistent with our scarce spectroscopic data. DFT-based chemical shift calculations on a limited set of top-ranked structures further ascertained the determined structure for ominoxanthone. Although the determined scaffold of ominoxanthone is unprecedented as a natural product, a plausible biosynthetic scenario involving a precursor known from cortinariaceous sources and classical biogenetic reactions could be proposed. MDPI 2023-02-06 /pmc/articles/PMC9965508/ /pubmed/36838545 http://dx.doi.org/10.3390/molecules28041557 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Trac, Alice Issaad, Célia Beniddir, Mehdi A. Bellanger, Jean-Michel Gallard, Jean-François Buevich, Alexei V. Elyashberg, Mikhail E. Le Pogam, Pierre Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title | Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title_full | Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title_fullStr | Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title_full_unstemmed | Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title_short | Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from Cortinarius ominosus Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation |
title_sort | ominoxanthone—the first xanthone linearly fused to a γ-lactone from cortinarius ominosus bidaud basidiomata. case- and dft-based structure elucidation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9965508/ https://www.ncbi.nlm.nih.gov/pubmed/36838545 http://dx.doi.org/10.3390/molecules28041557 |
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