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Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

Mainstream transcriptome profiling of susceptibility versus resistance to age-related diseases (ARDs) is focused on differentially expressed genes (DEGs) specific to gender, age, and pathogeneses. This approach fits in well with predictive, preventive, personalized, participatory medicine and helps...

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Autores principales: Shikhevich, Svetlana, Chadaeva, Irina, Khandaev, Bato, Kozhemyakina, Rimma, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Bogomolov, Anton, Klimova, Natalya V., Ivanisenko, Vladimir A., Demenkov, Pavel, Mustafin, Zakhar, Markel, Arcady, Savinkova, Ludmila, Kolchanov, Nikolay A., Kozlov, Vladimir, Ponomarenko, Mikhail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9966505/
https://www.ncbi.nlm.nih.gov/pubmed/36835409
http://dx.doi.org/10.3390/ijms24043996
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author Shikhevich, Svetlana
Chadaeva, Irina
Khandaev, Bato
Kozhemyakina, Rimma
Zolotareva, Karina
Kazachek, Anna
Oshchepkov, Dmitry
Bogomolov, Anton
Klimova, Natalya V.
Ivanisenko, Vladimir A.
Demenkov, Pavel
Mustafin, Zakhar
Markel, Arcady
Savinkova, Ludmila
Kolchanov, Nikolay A.
Kozlov, Vladimir
Ponomarenko, Mikhail
author_facet Shikhevich, Svetlana
Chadaeva, Irina
Khandaev, Bato
Kozhemyakina, Rimma
Zolotareva, Karina
Kazachek, Anna
Oshchepkov, Dmitry
Bogomolov, Anton
Klimova, Natalya V.
Ivanisenko, Vladimir A.
Demenkov, Pavel
Mustafin, Zakhar
Markel, Arcady
Savinkova, Ludmila
Kolchanov, Nikolay A.
Kozlov, Vladimir
Ponomarenko, Mikhail
author_sort Shikhevich, Svetlana
collection PubMed
description Mainstream transcriptome profiling of susceptibility versus resistance to age-related diseases (ARDs) is focused on differentially expressed genes (DEGs) specific to gender, age, and pathogeneses. This approach fits in well with predictive, preventive, personalized, participatory medicine and helps understand how, why, when, and what ARDs one can develop depending on their genetic background. Within this mainstream paradigm, we wanted to find out whether the known ARD-linked DEGs available in PubMed can reveal a molecular marker that will serve the purpose in anyone’s any tissue at any time. We sequenced the periaqueductal gray (PAG) transcriptome of tame versus aggressive rats, identified rat-behavior-related DEGs, and compared them with their known homologous animal ARD-linked DEGs. This analysis yielded statistically significant correlations between behavior-related and ARD-susceptibility-related fold changes (log(2) values) in the expression of these DEG homologs. We found principal components, PC1 and PC2, corresponding to the half-sum and the half-difference of these log(2) values, respectively. With the DEGs linked to ARD susceptibility and ARD resistance in humans used as controls, we verified these principal components. This yielded only one statistically significant common molecular marker for ARDs: an excess of Fcγ receptor IIb suppressing immune cell hyperactivation.
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spelling pubmed-99665052023-02-26 Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases Shikhevich, Svetlana Chadaeva, Irina Khandaev, Bato Kozhemyakina, Rimma Zolotareva, Karina Kazachek, Anna Oshchepkov, Dmitry Bogomolov, Anton Klimova, Natalya V. Ivanisenko, Vladimir A. Demenkov, Pavel Mustafin, Zakhar Markel, Arcady Savinkova, Ludmila Kolchanov, Nikolay A. Kozlov, Vladimir Ponomarenko, Mikhail Int J Mol Sci Article Mainstream transcriptome profiling of susceptibility versus resistance to age-related diseases (ARDs) is focused on differentially expressed genes (DEGs) specific to gender, age, and pathogeneses. This approach fits in well with predictive, preventive, personalized, participatory medicine and helps understand how, why, when, and what ARDs one can develop depending on their genetic background. Within this mainstream paradigm, we wanted to find out whether the known ARD-linked DEGs available in PubMed can reveal a molecular marker that will serve the purpose in anyone’s any tissue at any time. We sequenced the periaqueductal gray (PAG) transcriptome of tame versus aggressive rats, identified rat-behavior-related DEGs, and compared them with their known homologous animal ARD-linked DEGs. This analysis yielded statistically significant correlations between behavior-related and ARD-susceptibility-related fold changes (log(2) values) in the expression of these DEG homologs. We found principal components, PC1 and PC2, corresponding to the half-sum and the half-difference of these log(2) values, respectively. With the DEGs linked to ARD susceptibility and ARD resistance in humans used as controls, we verified these principal components. This yielded only one statistically significant common molecular marker for ARDs: an excess of Fcγ receptor IIb suppressing immune cell hyperactivation. MDPI 2023-02-16 /pmc/articles/PMC9966505/ /pubmed/36835409 http://dx.doi.org/10.3390/ijms24043996 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shikhevich, Svetlana
Chadaeva, Irina
Khandaev, Bato
Kozhemyakina, Rimma
Zolotareva, Karina
Kazachek, Anna
Oshchepkov, Dmitry
Bogomolov, Anton
Klimova, Natalya V.
Ivanisenko, Vladimir A.
Demenkov, Pavel
Mustafin, Zakhar
Markel, Arcady
Savinkova, Ludmila
Kolchanov, Nikolay A.
Kozlov, Vladimir
Ponomarenko, Mikhail
Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title_full Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title_fullStr Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title_full_unstemmed Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title_short Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
title_sort differentially expressed genes and molecular susceptibility to human age-related diseases
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9966505/
https://www.ncbi.nlm.nih.gov/pubmed/36835409
http://dx.doi.org/10.3390/ijms24043996
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