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A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks

Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. The best method to prevent CRC is with a colonoscopy. During this procedure, the gastroenterologist searches for polyps. However, there is a potential risk of polyps being missed by the gastroenterologist. Automated detec...

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Autores principales: Krenzer, Adrian, Banck, Michael, Makowski, Kevin, Hekalo, Amar, Fitting, Daniel, Troya, Joel, Sudarevic, Boban, Zoller, Wolfgang G., Hann, Alexander, Puppe, Frank
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9967208/
https://www.ncbi.nlm.nih.gov/pubmed/36826945
http://dx.doi.org/10.3390/jimaging9020026
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author Krenzer, Adrian
Banck, Michael
Makowski, Kevin
Hekalo, Amar
Fitting, Daniel
Troya, Joel
Sudarevic, Boban
Zoller, Wolfgang G.
Hann, Alexander
Puppe, Frank
author_facet Krenzer, Adrian
Banck, Michael
Makowski, Kevin
Hekalo, Amar
Fitting, Daniel
Troya, Joel
Sudarevic, Boban
Zoller, Wolfgang G.
Hann, Alexander
Puppe, Frank
author_sort Krenzer, Adrian
collection PubMed
description Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. The best method to prevent CRC is with a colonoscopy. During this procedure, the gastroenterologist searches for polyps. However, there is a potential risk of polyps being missed by the gastroenterologist. Automated detection of polyps helps to assist the gastroenterologist during a colonoscopy. There are already publications examining the problem of polyp detection in the literature. Nevertheless, most of these systems are only used in the research context and are not implemented for clinical application. Therefore, we introduce the first fully open-source automated polyp-detection system scoring best on current benchmark data and implementing it ready for clinical application. To create the polyp-detection system (ENDOMIND-Advanced), we combined our own collected data from different hospitals and practices in Germany with open-source datasets to create a dataset with over 500,000 annotated images. ENDOMIND-Advanced leverages a post-processing technique based on video detection to work in real-time with a stream of images. It is integrated into a prototype ready for application in clinical interventions. We achieve better performance compared to the best system in the literature and score a F1-score of 90.24% on the open-source CVC-VideoClinicDB benchmark.
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spelling pubmed-99672082023-02-26 A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks Krenzer, Adrian Banck, Michael Makowski, Kevin Hekalo, Amar Fitting, Daniel Troya, Joel Sudarevic, Boban Zoller, Wolfgang G. Hann, Alexander Puppe, Frank J Imaging Article Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. The best method to prevent CRC is with a colonoscopy. During this procedure, the gastroenterologist searches for polyps. However, there is a potential risk of polyps being missed by the gastroenterologist. Automated detection of polyps helps to assist the gastroenterologist during a colonoscopy. There are already publications examining the problem of polyp detection in the literature. Nevertheless, most of these systems are only used in the research context and are not implemented for clinical application. Therefore, we introduce the first fully open-source automated polyp-detection system scoring best on current benchmark data and implementing it ready for clinical application. To create the polyp-detection system (ENDOMIND-Advanced), we combined our own collected data from different hospitals and practices in Germany with open-source datasets to create a dataset with over 500,000 annotated images. ENDOMIND-Advanced leverages a post-processing technique based on video detection to work in real-time with a stream of images. It is integrated into a prototype ready for application in clinical interventions. We achieve better performance compared to the best system in the literature and score a F1-score of 90.24% on the open-source CVC-VideoClinicDB benchmark. MDPI 2023-01-24 /pmc/articles/PMC9967208/ /pubmed/36826945 http://dx.doi.org/10.3390/jimaging9020026 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Krenzer, Adrian
Banck, Michael
Makowski, Kevin
Hekalo, Amar
Fitting, Daniel
Troya, Joel
Sudarevic, Boban
Zoller, Wolfgang G.
Hann, Alexander
Puppe, Frank
A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title_full A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title_fullStr A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title_full_unstemmed A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title_short A Real-Time Polyp-Detection System with Clinical Application in Colonoscopy Using Deep Convolutional Neural Networks
title_sort real-time polyp-detection system with clinical application in colonoscopy using deep convolutional neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9967208/
https://www.ncbi.nlm.nih.gov/pubmed/36826945
http://dx.doi.org/10.3390/jimaging9020026
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