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Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China

In this work, bacterial community composition and actinobacteria resources were explored in extremely hot and hyper-arid areas of Flaming Mountain. This was achieved through a combination of PCR amplicon sequencing of bacterial 16S rRNA gene and cultivation-dependent isolation and characterization e...

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Autores principales: He, Zixuan, Wang, Yuxian, Bai, Xiaoyu, Chu, Min, Yi, Yuanyang, Zhu, Jing, Gu, Meiying, Jiang, Ling, Zhang, Zhidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9967839/
https://www.ncbi.nlm.nih.gov/pubmed/36838455
http://dx.doi.org/10.3390/microorganisms11020489
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author He, Zixuan
Wang, Yuxian
Bai, Xiaoyu
Chu, Min
Yi, Yuanyang
Zhu, Jing
Gu, Meiying
Jiang, Ling
Zhang, Zhidong
author_facet He, Zixuan
Wang, Yuxian
Bai, Xiaoyu
Chu, Min
Yi, Yuanyang
Zhu, Jing
Gu, Meiying
Jiang, Ling
Zhang, Zhidong
author_sort He, Zixuan
collection PubMed
description In this work, bacterial community composition and actinobacteria resources were explored in extremely hot and hyper-arid areas of Flaming Mountain. This was achieved through a combination of PCR amplicon sequencing of bacterial 16S rRNA gene and cultivation-dependent isolation and characterization efforts. According to the high-throughput sequencing results and soil characteristics, 11 kinds of media were firstly designed to isolate actinobacteria, following the screening and identification of related strains. The results showed that a total of 2994 operational taxonomic units (OTUs) were obtained, involving 22 phyla, 77 orders and 121 genera. Among them, actinobacteria with the relative abundance of 8% ranked third, accounting for 33 genera and 47 species. A total of 132 strains distributed by eight families and 11 genera of actinobacteria were isolated from 11 media, of which six strains were potential new species. Furthermore, the functional characteristics of isolated strains were preliminarily evaluated. The results showed that the obtained strains generally had tolerance against heat, salt and alkali. Fifty-two strains had antibacterial activity, 69 strains could produce hydrolases, and 12.4% of the strains had quorum sensing inhibitory activity. The present study has laid a solid foundation for further understanding the bacterial diversity and exploiting actinobacteria resources in the Flaming Mountain area.
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spelling pubmed-99678392023-02-27 Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China He, Zixuan Wang, Yuxian Bai, Xiaoyu Chu, Min Yi, Yuanyang Zhu, Jing Gu, Meiying Jiang, Ling Zhang, Zhidong Microorganisms Article In this work, bacterial community composition and actinobacteria resources were explored in extremely hot and hyper-arid areas of Flaming Mountain. This was achieved through a combination of PCR amplicon sequencing of bacterial 16S rRNA gene and cultivation-dependent isolation and characterization efforts. According to the high-throughput sequencing results and soil characteristics, 11 kinds of media were firstly designed to isolate actinobacteria, following the screening and identification of related strains. The results showed that a total of 2994 operational taxonomic units (OTUs) were obtained, involving 22 phyla, 77 orders and 121 genera. Among them, actinobacteria with the relative abundance of 8% ranked third, accounting for 33 genera and 47 species. A total of 132 strains distributed by eight families and 11 genera of actinobacteria were isolated from 11 media, of which six strains were potential new species. Furthermore, the functional characteristics of isolated strains were preliminarily evaluated. The results showed that the obtained strains generally had tolerance against heat, salt and alkali. Fifty-two strains had antibacterial activity, 69 strains could produce hydrolases, and 12.4% of the strains had quorum sensing inhibitory activity. The present study has laid a solid foundation for further understanding the bacterial diversity and exploiting actinobacteria resources in the Flaming Mountain area. MDPI 2023-02-16 /pmc/articles/PMC9967839/ /pubmed/36838455 http://dx.doi.org/10.3390/microorganisms11020489 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
He, Zixuan
Wang, Yuxian
Bai, Xiaoyu
Chu, Min
Yi, Yuanyang
Zhu, Jing
Gu, Meiying
Jiang, Ling
Zhang, Zhidong
Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title_full Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title_fullStr Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title_full_unstemmed Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title_short Bacterial Community Composition and Isolation of Actinobacteria from the Soil of Flaming Mountain in Xinjiang, China
title_sort bacterial community composition and isolation of actinobacteria from the soil of flaming mountain in xinjiang, china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9967839/
https://www.ncbi.nlm.nih.gov/pubmed/36838455
http://dx.doi.org/10.3390/microorganisms11020489
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