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Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma
Background: The diffuse large B-cell lymphoma (DLBCL) is a heterogeneous lymphoma with a dismal outcome, due to approximately 40% patients will be relapsed or refractory to the standard therapy of rituximab plus cyclophosphamide, doxorubicin, vincristine and prednisone (R-CHOP). Therefore, we need u...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9969582/ https://www.ncbi.nlm.nih.gov/pubmed/36860924 http://dx.doi.org/10.7150/jca.80926 |
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author | Wu, Wenqi Wang, Jinhuan Jiang, Yanan Hu, Xin Tian, Ye Chen, Long Sun, Huimeng Li, Yuhang Liu, Su Lv, Yangyang Guo, Jing Xu, Hong Xing, Donghui Zhai, Yixin Tian, Linyan Li, Cheng He, Xiang Luo, Kaiping Pan, Yuan Zhao, Zhigang |
author_facet | Wu, Wenqi Wang, Jinhuan Jiang, Yanan Hu, Xin Tian, Ye Chen, Long Sun, Huimeng Li, Yuhang Liu, Su Lv, Yangyang Guo, Jing Xu, Hong Xing, Donghui Zhai, Yixin Tian, Linyan Li, Cheng He, Xiang Luo, Kaiping Pan, Yuan Zhao, Zhigang |
author_sort | Wu, Wenqi |
collection | PubMed |
description | Background: The diffuse large B-cell lymphoma (DLBCL) is a heterogeneous lymphoma with a dismal outcome, due to approximately 40% patients will be relapsed or refractory to the standard therapy of rituximab plus cyclophosphamide, doxorubicin, vincristine and prednisone (R-CHOP). Therefore, we need urgently to explore the approach to classify the risk of DLBCL patients accurately and accurately targeting therapy. The ribosome is a vital cellular organelle that is mainly responsible for translation mRNA into protein, moreover, more and more reports revealed that ribosome was associated with cellular proliferation and tumorigenesis. Therefore, our study aimed to construct a prognostic model of DLBCL patients using ribosome-related genes (RibGs). Method: We screened differentially expressed RibGs between healthy donors' B cells and DLBCL patients' malignant B cells in GSE56315 dataset. Next, we performed analyses of univariate Cox regression, the least absolute shrinkage and selection operator (LASSO) regression and multivariate Cox regression analyses to establish the prognostic model consisting of 15 RibGs in GSE10846 training set. Then, we validated the model by a range of analyses including Cox regression, Kaplan-Meier survival, ROC curve, and nomogram in training and validation cohorts. Results: The RibGs model showed a reliably predictive capability. We found the upregulated pathways in high-risk group most associated with innate immune reaction such as interferon response, complement and inflammatory responses. In addition, a nomogram including age, gender, IPI score and risk score was constructed to help explain the prognostic model. We also discovered the high-risk patients were more sensitive to some certain drugs. Finally, knocking out the NLE1 could inhibit the proliferation of DLBCL cell lines. Conclusion: As far as we know, it is the first time to predict the prognosis of DLBCL using the RibGs and give a new sight for DLBCL treatment. Importantly, the RibGs model could be acted as a supplementary to the IPI in classifying the risk of DLBCL patients. |
format | Online Article Text |
id | pubmed-9969582 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-99695822023-02-28 Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma Wu, Wenqi Wang, Jinhuan Jiang, Yanan Hu, Xin Tian, Ye Chen, Long Sun, Huimeng Li, Yuhang Liu, Su Lv, Yangyang Guo, Jing Xu, Hong Xing, Donghui Zhai, Yixin Tian, Linyan Li, Cheng He, Xiang Luo, Kaiping Pan, Yuan Zhao, Zhigang J Cancer Research Paper Background: The diffuse large B-cell lymphoma (DLBCL) is a heterogeneous lymphoma with a dismal outcome, due to approximately 40% patients will be relapsed or refractory to the standard therapy of rituximab plus cyclophosphamide, doxorubicin, vincristine and prednisone (R-CHOP). Therefore, we need urgently to explore the approach to classify the risk of DLBCL patients accurately and accurately targeting therapy. The ribosome is a vital cellular organelle that is mainly responsible for translation mRNA into protein, moreover, more and more reports revealed that ribosome was associated with cellular proliferation and tumorigenesis. Therefore, our study aimed to construct a prognostic model of DLBCL patients using ribosome-related genes (RibGs). Method: We screened differentially expressed RibGs between healthy donors' B cells and DLBCL patients' malignant B cells in GSE56315 dataset. Next, we performed analyses of univariate Cox regression, the least absolute shrinkage and selection operator (LASSO) regression and multivariate Cox regression analyses to establish the prognostic model consisting of 15 RibGs in GSE10846 training set. Then, we validated the model by a range of analyses including Cox regression, Kaplan-Meier survival, ROC curve, and nomogram in training and validation cohorts. Results: The RibGs model showed a reliably predictive capability. We found the upregulated pathways in high-risk group most associated with innate immune reaction such as interferon response, complement and inflammatory responses. In addition, a nomogram including age, gender, IPI score and risk score was constructed to help explain the prognostic model. We also discovered the high-risk patients were more sensitive to some certain drugs. Finally, knocking out the NLE1 could inhibit the proliferation of DLBCL cell lines. Conclusion: As far as we know, it is the first time to predict the prognosis of DLBCL using the RibGs and give a new sight for DLBCL treatment. Importantly, the RibGs model could be acted as a supplementary to the IPI in classifying the risk of DLBCL patients. Ivyspring International Publisher 2023-01-22 /pmc/articles/PMC9969582/ /pubmed/36860924 http://dx.doi.org/10.7150/jca.80926 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Wu, Wenqi Wang, Jinhuan Jiang, Yanan Hu, Xin Tian, Ye Chen, Long Sun, Huimeng Li, Yuhang Liu, Su Lv, Yangyang Guo, Jing Xu, Hong Xing, Donghui Zhai, Yixin Tian, Linyan Li, Cheng He, Xiang Luo, Kaiping Pan, Yuan Zhao, Zhigang Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title | Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title_full | Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title_fullStr | Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title_full_unstemmed | Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title_short | Prognostic Significance of Ribosome-related Genes Signature in Diffuse Large B Cell Lymphoma |
title_sort | prognostic significance of ribosome-related genes signature in diffuse large b cell lymphoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9969582/ https://www.ncbi.nlm.nih.gov/pubmed/36860924 http://dx.doi.org/10.7150/jca.80926 |
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