Acute COG complex inactivation unveiled its immediate impact on Golgi and illuminated the nature of intra‐Golgi recycling vesicles

Conserved Oligomeric Golgi (COG) complex controls Golgi trafficking and glycosylation, but the precise COG mechanism is unknown. The auxin‐inducible acute degradation system was employed to investigate initial defects resulting from COG dysfunction. We found that acute COG inactivation caused a massive accumulation of COG‐dependent (CCD) vesicles that carry the bulk of Golgi enzymes and resident proteins. v‐SNAREs (GS15, GS28) and v‐tethers (giantin, golgin84, and TMF1) were relocalized into CCD vesicles, while t‐SNAREs (STX5, YKT6), t‐tethers (GM130, p115), and most of Rab proteins remained Golgi‐associated. Airyscan microscopy and velocity gradient analysis revealed that different Golgi residents are segregated into different populations of CCD vesicles. Acute COG depletion significantly affected three Golgi‐based vesicular coats—COPI, AP1, and GGA, suggesting that COG uniquely orchestrates tethering of multiple types of intra‐Golgi CCD vesicles produced by different coat machineries. This study provided the first detailed view of primary cellular defects associated with COG dysfunction in human cells.