Split k-mer analysis compared to cgMLST and SNP-based core genome analysis for detecting transmission of vancomycin-resistant enterococci: results from routine outbreak analyses across different hospitals and hospitals networks in Berlin, Germany

The increase of Vancomycin-resistant Enterococcus faecium (VREfm) in recent years has been partially attributed to the rise of specific clonal lineages, which have been identified throughout Germany. To date, there is no gold standard for the interpretation of genomic data for outbreak analyses. New...

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Detalles Bibliográficos
Autores principales: Maechler, Friederike, Weber, Anna, Schwengers, Oliver, Schwab, Frank, Denkel, Luisa, Behnke, Michael, Gastmeier, Petra, Kola, Axel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2023
Materias:
Research Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9973845/
https://www.ncbi.nlm.nih.gov/pubmed/36748706
http://dx.doi.org/10.1099/mgen.0.000937

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