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Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean

Marine macroalgae are being recognized as reservoirs of biologically active compounds, as their surfaces are susceptible to the colonization of microorganisms which can produce enzymes with a wide range of molecular architectures. Among these bacteria, Achromobacter is responsible for the biosynthes...

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Autores principales: Niño Corredor, Albert Nicolás, Comba González, Natalia Beatriz, Acelas, Mauricio, Montoya Castaño, Dolly
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9974418/
https://www.ncbi.nlm.nih.gov/pubmed/36874444
http://dx.doi.org/10.1016/j.btre.2023.e00788
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author Niño Corredor, Albert Nicolás
Comba González, Natalia Beatriz
Acelas, Mauricio
Montoya Castaño, Dolly
author_facet Niño Corredor, Albert Nicolás
Comba González, Natalia Beatriz
Acelas, Mauricio
Montoya Castaño, Dolly
author_sort Niño Corredor, Albert Nicolás
collection PubMed
description Marine macroalgae are being recognized as reservoirs of biologically active compounds, as their surfaces are susceptible to the colonization of microorganisms which can produce enzymes with a wide range of molecular architectures. Among these bacteria, Achromobacter is responsible for the biosynthesis of laccases. In this research, we performed a bioinformatic pipeline to annotate the sequenced complete genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, from the macroalgal surface of the Ulva lactuca species; this strain showed laccase activity which has been previously assessed on plate assays. The genome of A. denitrificans strain EPI24 has a size of ∼6.95 Mb, a GC content of 67.33%, and 6,603 protein-coding genes. The functional annotation of the A. denitrificans strain EPI24 genome confirmed the presence of genes encoding for laccases, which could have functional properties of interest in processes such as the biodegradation of phenolic compounds under versatile and efficient conditions.
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spelling pubmed-99744182023-03-02 Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean Niño Corredor, Albert Nicolás Comba González, Natalia Beatriz Acelas, Mauricio Montoya Castaño, Dolly Biotechnol Rep (Amst) Short Communication Marine macroalgae are being recognized as reservoirs of biologically active compounds, as their surfaces are susceptible to the colonization of microorganisms which can produce enzymes with a wide range of molecular architectures. Among these bacteria, Achromobacter is responsible for the biosynthesis of laccases. In this research, we performed a bioinformatic pipeline to annotate the sequenced complete genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, from the macroalgal surface of the Ulva lactuca species; this strain showed laccase activity which has been previously assessed on plate assays. The genome of A. denitrificans strain EPI24 has a size of ∼6.95 Mb, a GC content of 67.33%, and 6,603 protein-coding genes. The functional annotation of the A. denitrificans strain EPI24 genome confirmed the presence of genes encoding for laccases, which could have functional properties of interest in processes such as the biodegradation of phenolic compounds under versatile and efficient conditions. Elsevier 2023-02-22 /pmc/articles/PMC9974418/ /pubmed/36874444 http://dx.doi.org/10.1016/j.btre.2023.e00788 Text en © 2023 The Authors. Published by Elsevier B.V. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Short Communication
Niño Corredor, Albert Nicolás
Comba González, Natalia Beatriz
Acelas, Mauricio
Montoya Castaño, Dolly
Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title_full Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title_fullStr Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title_full_unstemmed Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title_short Genome of the epiphytic bacterium Achromobacter denitrificans strain EPI24, isolated from a macroalga located in the Colombian Caribbean
title_sort genome of the epiphytic bacterium achromobacter denitrificans strain epi24, isolated from a macroalga located in the colombian caribbean
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9974418/
https://www.ncbi.nlm.nih.gov/pubmed/36874444
http://dx.doi.org/10.1016/j.btre.2023.e00788
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