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U.Taxonstand: An R package for standardizing scientific names of plants and animals
The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal spec...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Kunming Institute of Botany, Chinese Academy of Sciences
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9975469/ https://www.ncbi.nlm.nih.gov/pubmed/36876314 http://dx.doi.org/10.1016/j.pld.2022.09.001 |
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author | Zhang, Jian Qian, Hong |
author_facet | Zhang, Jian Qian, Hong |
author_sort | Zhang, Jian |
collection | PubMed |
description | The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal species lists at a fast speed and at a high rate of matching success. Unlike most of other similar R packages each of which works with only one taxonomic database, U.Taxonstand can work with all taxonomic databases, as long as they are properly formatted. Multiple databases for plants and animals that can be directly used by U.Taxonstand, which include bryophytes, vascular plants, amphibians, birds, fishes, mammals, and reptiles, are available online. U.Taxonstand can be a very useful tool for botanists, zoologists, ecologists and biogeographers to standardize and harmonize scientific names of organisms. |
format | Online Article Text |
id | pubmed-9975469 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Kunming Institute of Botany, Chinese Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-99754692023-03-02 U.Taxonstand: An R package for standardizing scientific names of plants and animals Zhang, Jian Qian, Hong Plant Divers Short Communication The scientific names of organisms are key identifiers of plants and animals. Correctly treating scientific names is a prerequisite for biodiversity research and documentation. Here, we present an R package, ‘U.Taxonstand’, which can standardize and harmonize scientific names in plant and animal species lists at a fast speed and at a high rate of matching success. Unlike most of other similar R packages each of which works with only one taxonomic database, U.Taxonstand can work with all taxonomic databases, as long as they are properly formatted. Multiple databases for plants and animals that can be directly used by U.Taxonstand, which include bryophytes, vascular plants, amphibians, birds, fishes, mammals, and reptiles, are available online. U.Taxonstand can be a very useful tool for botanists, zoologists, ecologists and biogeographers to standardize and harmonize scientific names of organisms. Kunming Institute of Botany, Chinese Academy of Sciences 2022-09-08 /pmc/articles/PMC9975469/ /pubmed/36876314 http://dx.doi.org/10.1016/j.pld.2022.09.001 Text en © 2022 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Short Communication Zhang, Jian Qian, Hong U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title | U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title_full | U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title_fullStr | U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title_full_unstemmed | U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title_short | U.Taxonstand: An R package for standardizing scientific names of plants and animals |
title_sort | u.taxonstand: an r package for standardizing scientific names of plants and animals |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9975469/ https://www.ncbi.nlm.nih.gov/pubmed/36876314 http://dx.doi.org/10.1016/j.pld.2022.09.001 |
work_keys_str_mv | AT zhangjian utaxonstandanrpackageforstandardizingscientificnamesofplantsandanimals AT qianhong utaxonstandanrpackageforstandardizingscientificnamesofplantsandanimals |