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Activatable G-quadruplex based catalases for signal transduction in biosensing

Discovery of oxidative catalysis with G-quadruplex•hemin constructs prompted a range of exciting developments in the field of biosensor design. Thus, G-quadruplex based DNAzymes with peroxidase activity found a niche as signal transduction modules in a wide range of analytical applications. The abil...

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Autores principales: Iwaniuk, Elzbieta E, Adebayo, Thuwebat, Coleman, Seth, Villaros, Caitlin G, Nesterova, Irina V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9976883/
https://www.ncbi.nlm.nih.gov/pubmed/36727464
http://dx.doi.org/10.1093/nar/gkad031
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author Iwaniuk, Elzbieta E
Adebayo, Thuwebat
Coleman, Seth
Villaros, Caitlin G
Nesterova, Irina V
author_facet Iwaniuk, Elzbieta E
Adebayo, Thuwebat
Coleman, Seth
Villaros, Caitlin G
Nesterova, Irina V
author_sort Iwaniuk, Elzbieta E
collection PubMed
description Discovery of oxidative catalysis with G-quadruplex•hemin constructs prompted a range of exciting developments in the field of biosensor design. Thus, G-quadruplex based DNAzymes with peroxidase activity found a niche as signal transduction modules in a wide range of analytical applications. The ability of nucleic acid scaffolds to recognise a variety of practically meaningful markers and to translate the recognition events into conformational changes powers numerous sensor design possibilities. In this work, we establish a catalase activity of G-quadruplex•hemin scaffolds. Catalase activated hydrogen peroxide decomposition generates molecular oxygen that forms bubbles. Observation of bubbles is a truly equipment free signal readout platform that is highly desirable in limited resources or do-it-yourself environments. We take a preliminary insight into a G-quadruplex structure—folding topology—catalase activity correlation and establish efficient operating conditions. Further, we demonstrate the platform's potential as a signal transduction modality for reporting on biomolecular recognition using an oligonucleotide as a proof—of—concept target. Ultimately, activatable catalases based on G-quadruplex•hemin scaffolds promise to become valuable contributors towards accessible molecular diagnostics applications.
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spelling pubmed-99768832023-03-02 Activatable G-quadruplex based catalases for signal transduction in biosensing Iwaniuk, Elzbieta E Adebayo, Thuwebat Coleman, Seth Villaros, Caitlin G Nesterova, Irina V Nucleic Acids Res Chemical Biology and Nucleic Acid Chemistry Discovery of oxidative catalysis with G-quadruplex•hemin constructs prompted a range of exciting developments in the field of biosensor design. Thus, G-quadruplex based DNAzymes with peroxidase activity found a niche as signal transduction modules in a wide range of analytical applications. The ability of nucleic acid scaffolds to recognise a variety of practically meaningful markers and to translate the recognition events into conformational changes powers numerous sensor design possibilities. In this work, we establish a catalase activity of G-quadruplex•hemin scaffolds. Catalase activated hydrogen peroxide decomposition generates molecular oxygen that forms bubbles. Observation of bubbles is a truly equipment free signal readout platform that is highly desirable in limited resources or do-it-yourself environments. We take a preliminary insight into a G-quadruplex structure—folding topology—catalase activity correlation and establish efficient operating conditions. Further, we demonstrate the platform's potential as a signal transduction modality for reporting on biomolecular recognition using an oligonucleotide as a proof—of—concept target. Ultimately, activatable catalases based on G-quadruplex•hemin scaffolds promise to become valuable contributors towards accessible molecular diagnostics applications. Oxford University Press 2023-02-02 /pmc/articles/PMC9976883/ /pubmed/36727464 http://dx.doi.org/10.1093/nar/gkad031 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Chemical Biology and Nucleic Acid Chemistry
Iwaniuk, Elzbieta E
Adebayo, Thuwebat
Coleman, Seth
Villaros, Caitlin G
Nesterova, Irina V
Activatable G-quadruplex based catalases for signal transduction in biosensing
title Activatable G-quadruplex based catalases for signal transduction in biosensing
title_full Activatable G-quadruplex based catalases for signal transduction in biosensing
title_fullStr Activatable G-quadruplex based catalases for signal transduction in biosensing
title_full_unstemmed Activatable G-quadruplex based catalases for signal transduction in biosensing
title_short Activatable G-quadruplex based catalases for signal transduction in biosensing
title_sort activatable g-quadruplex based catalases for signal transduction in biosensing
topic Chemical Biology and Nucleic Acid Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9976883/
https://www.ncbi.nlm.nih.gov/pubmed/36727464
http://dx.doi.org/10.1093/nar/gkad031
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