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Nanopore sequencing for N1-methylpseudouridine in RNA reveals sequence-dependent discrimination of the modified nucleotide triphosphate during transcription

Direct RNA sequencing with a commercial nanopore platform was used to sequence RNA containing uridine (U), pseudouridine (Ψ) or N1-methylpseudouridine (m(1)Ψ) in >100 different 5-nucleotide contexts. The base calling data for Ψ or m(1)Ψ were similar but different from U allowing their detection....

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Detalles Bibliográficos
Autores principales: Fleming, Aaron M, Burrows, Cynthia J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9976907/
https://www.ncbi.nlm.nih.gov/pubmed/36727474
http://dx.doi.org/10.1093/nar/gkad044

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