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Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. T...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9977060/ https://www.ncbi.nlm.nih.gov/pubmed/36857331 http://dx.doi.org/10.1371/journal.pone.0277815 |
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author | Hwang, Jihye Choi, Eun Hwa Park, Bia Kim, Gyeongmin Shin, Chorong Lee, Joon Ha Hwang, Jae Sam Hwang, Ui Wook |
author_facet | Hwang, Jihye Choi, Eun Hwa Park, Bia Kim, Gyeongmin Shin, Chorong Lee, Joon Ha Hwang, Jae Sam Hwang, Ui Wook |
author_sort | Hwang, Jihye |
collection | PubMed |
description | A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. The transcriptome assembly consists of 23,551 high-quality transcripts which are approximately 96.7% covered. We found 265 wing development genes, 19 metamorphosis genes, and 1,314 candidates. Of the 1,598 genes, 1,594 are included exclusively in cluster 4 with similar gene co-expression patterns. The network centrality analyses showed that wing development- and metamorphosis-related genes have a high degree of betweenness centrality and are expressed most highly in eggs, moderately in pupa and adults, and lowest in larva. This study provides some meaningful clues for elucidating the genetic modulation mechanism of wing development and metamorphosis in P. b. seulensis. |
format | Online Article Text |
id | pubmed-9977060 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-99770602023-03-02 Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis Hwang, Jihye Choi, Eun Hwa Park, Bia Kim, Gyeongmin Shin, Chorong Lee, Joon Ha Hwang, Jae Sam Hwang, Ui Wook PLoS One Research Article A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. The transcriptome assembly consists of 23,551 high-quality transcripts which are approximately 96.7% covered. We found 265 wing development genes, 19 metamorphosis genes, and 1,314 candidates. Of the 1,598 genes, 1,594 are included exclusively in cluster 4 with similar gene co-expression patterns. The network centrality analyses showed that wing development- and metamorphosis-related genes have a high degree of betweenness centrality and are expressed most highly in eggs, moderately in pupa and adults, and lowest in larva. This study provides some meaningful clues for elucidating the genetic modulation mechanism of wing development and metamorphosis in P. b. seulensis. Public Library of Science 2023-03-01 /pmc/articles/PMC9977060/ /pubmed/36857331 http://dx.doi.org/10.1371/journal.pone.0277815 Text en © 2023 Hwang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Hwang, Jihye Choi, Eun Hwa Park, Bia Kim, Gyeongmin Shin, Chorong Lee, Joon Ha Hwang, Jae Sam Hwang, Ui Wook Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title | Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title_full | Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title_fullStr | Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title_full_unstemmed | Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title_short | Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
title_sort | transcriptome profiling for developmental stages protaetia brevitarsis seulensis with focus on wing development and metamorphosis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9977060/ https://www.ncbi.nlm.nih.gov/pubmed/36857331 http://dx.doi.org/10.1371/journal.pone.0277815 |
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