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Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis

A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. T...

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Autores principales: Hwang, Jihye, Choi, Eun Hwa, Park, Bia, Kim, Gyeongmin, Shin, Chorong, Lee, Joon Ha, Hwang, Jae Sam, Hwang, Ui Wook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9977060/
https://www.ncbi.nlm.nih.gov/pubmed/36857331
http://dx.doi.org/10.1371/journal.pone.0277815
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author Hwang, Jihye
Choi, Eun Hwa
Park, Bia
Kim, Gyeongmin
Shin, Chorong
Lee, Joon Ha
Hwang, Jae Sam
Hwang, Ui Wook
author_facet Hwang, Jihye
Choi, Eun Hwa
Park, Bia
Kim, Gyeongmin
Shin, Chorong
Lee, Joon Ha
Hwang, Jae Sam
Hwang, Ui Wook
author_sort Hwang, Jihye
collection PubMed
description A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. The transcriptome assembly consists of 23,551 high-quality transcripts which are approximately 96.7% covered. We found 265 wing development genes, 19 metamorphosis genes, and 1,314 candidates. Of the 1,598 genes, 1,594 are included exclusively in cluster 4 with similar gene co-expression patterns. The network centrality analyses showed that wing development- and metamorphosis-related genes have a high degree of betweenness centrality and are expressed most highly in eggs, moderately in pupa and adults, and lowest in larva. This study provides some meaningful clues for elucidating the genetic modulation mechanism of wing development and metamorphosis in P. b. seulensis.
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spelling pubmed-99770602023-03-02 Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis Hwang, Jihye Choi, Eun Hwa Park, Bia Kim, Gyeongmin Shin, Chorong Lee, Joon Ha Hwang, Jae Sam Hwang, Ui Wook PLoS One Research Article A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. The transcriptome assembly consists of 23,551 high-quality transcripts which are approximately 96.7% covered. We found 265 wing development genes, 19 metamorphosis genes, and 1,314 candidates. Of the 1,598 genes, 1,594 are included exclusively in cluster 4 with similar gene co-expression patterns. The network centrality analyses showed that wing development- and metamorphosis-related genes have a high degree of betweenness centrality and are expressed most highly in eggs, moderately in pupa and adults, and lowest in larva. This study provides some meaningful clues for elucidating the genetic modulation mechanism of wing development and metamorphosis in P. b. seulensis. Public Library of Science 2023-03-01 /pmc/articles/PMC9977060/ /pubmed/36857331 http://dx.doi.org/10.1371/journal.pone.0277815 Text en © 2023 Hwang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hwang, Jihye
Choi, Eun Hwa
Park, Bia
Kim, Gyeongmin
Shin, Chorong
Lee, Joon Ha
Hwang, Jae Sam
Hwang, Ui Wook
Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title_full Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title_fullStr Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title_full_unstemmed Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title_short Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis
title_sort transcriptome profiling for developmental stages protaetia brevitarsis seulensis with focus on wing development and metamorphosis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9977060/
https://www.ncbi.nlm.nih.gov/pubmed/36857331
http://dx.doi.org/10.1371/journal.pone.0277815
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