Cargando…
Using strain-resolved analysis to identify contamination in metagenomics data
BACKGROUND: Metagenomics analyses can be negatively impacted by DNA contamination. While external sources of contamination such as DNA extraction kits have been widely reported and investigated, contamination originating within the study itself remains underreported. RESULTS: Here, we applied high-r...
Autores principales: | Lou, Yue Clare, Hoff, Jordan, Olm, Matthew R., West-Roberts, Jacob, Diamond, Spencer, Firek, Brian A., Morowitz, Michael J., Banfield, Jillian F. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979413/ https://www.ncbi.nlm.nih.gov/pubmed/36864482 http://dx.doi.org/10.1186/s40168-023-01477-2 |
Ejemplares similares
-
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
por: Olm, Matthew R., et al.
Publicado: (2019) -
Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition
por: Lou, Yue Clare, et al.
Publicado: (2021) -
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
por: Brooks, Brandon, et al.
Publicado: (2017) -
Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome
por: Rahman, Sumayah F., et al.
Publicado: (2018) -
Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut
por: Sher, Yonatan, et al.
Publicado: (2020)