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Selection processes of Arctic seasonal glacier snowpack bacterial communities

BACKGROUND: Arctic snowpack microbial communities are continually subject to dynamic chemical and microbial input from the atmosphere. As such, the factors that contribute to structuring their microbial communities are complex and have yet to be completely resolved. These snowpack communities can be...

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Autores principales: Keuschnig, Christoph, Vogel, Timothy M., Barbaro, Elena, Spolaor, Andrea, Koziol, Krystyna, Björkman, Mats P., Zdanowicz, Christian, Gallet, Jean-Charles, Luks, Bartłomiej, Layton, Rose, Larose, Catherine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979512/
https://www.ncbi.nlm.nih.gov/pubmed/36864462
http://dx.doi.org/10.1186/s40168-023-01473-6
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author Keuschnig, Christoph
Vogel, Timothy M.
Barbaro, Elena
Spolaor, Andrea
Koziol, Krystyna
Björkman, Mats P.
Zdanowicz, Christian
Gallet, Jean-Charles
Luks, Bartłomiej
Layton, Rose
Larose, Catherine
author_facet Keuschnig, Christoph
Vogel, Timothy M.
Barbaro, Elena
Spolaor, Andrea
Koziol, Krystyna
Björkman, Mats P.
Zdanowicz, Christian
Gallet, Jean-Charles
Luks, Bartłomiej
Layton, Rose
Larose, Catherine
author_sort Keuschnig, Christoph
collection PubMed
description BACKGROUND: Arctic snowpack microbial communities are continually subject to dynamic chemical and microbial input from the atmosphere. As such, the factors that contribute to structuring their microbial communities are complex and have yet to be completely resolved. These snowpack communities can be used to evaluate whether they fit niche-based or neutral assembly theories. METHODS: We sampled snow from 22 glacier sites on 7 glaciers across Svalbard in April during the maximum snow accumulation period and prior to the melt period to evaluate the factors that drive snowpack metataxonomy. These snowpacks were seasonal, accumulating in early winter on bare ice and firn and completely melting out in autumn. Using a Bayesian fitting strategy to evaluate Hubbell’s Unified Neutral Theory of Biodiversity at multiple sites, we tested for neutrality and defined immigration rates at different taxonomic levels. Bacterial abundance and diversity were measured and the amount of potential ice-nucleating bacteria was calculated. The chemical composition (anions, cations, organic acids) and particulate impurity load (elemental and organic carbon) of the winter and spring snowpack were also characterized. We used these data in addition to geographical information to assess possible niche-based effects on snow microbial communities using multivariate and variable partitioning analysis. RESULTS: While certain taxonomic signals were found to fit the neutral assembly model, clear evidence of niche-based selection was observed at most sites. Inorganic chemistry was not linked directly to diversity, but helped to identify predominant colonization sources and predict microbial abundance, which was tightly linked to sea spray. Organic acids were the most significant predictors of microbial diversity. At low organic acid concentrations, the snow microbial structure represented the seeding community closely, and evolved away from it at higher organic acid concentrations, with concomitant increases in bacterial numbers. CONCLUSIONS: These results indicate that environmental selection plays a significant role in structuring snow microbial communities and that future studies should focus on activity and growth. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40168-023-01473-6.
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spelling pubmed-99795122023-03-03 Selection processes of Arctic seasonal glacier snowpack bacterial communities Keuschnig, Christoph Vogel, Timothy M. Barbaro, Elena Spolaor, Andrea Koziol, Krystyna Björkman, Mats P. Zdanowicz, Christian Gallet, Jean-Charles Luks, Bartłomiej Layton, Rose Larose, Catherine Microbiome Research BACKGROUND: Arctic snowpack microbial communities are continually subject to dynamic chemical and microbial input from the atmosphere. As such, the factors that contribute to structuring their microbial communities are complex and have yet to be completely resolved. These snowpack communities can be used to evaluate whether they fit niche-based or neutral assembly theories. METHODS: We sampled snow from 22 glacier sites on 7 glaciers across Svalbard in April during the maximum snow accumulation period and prior to the melt period to evaluate the factors that drive snowpack metataxonomy. These snowpacks were seasonal, accumulating in early winter on bare ice and firn and completely melting out in autumn. Using a Bayesian fitting strategy to evaluate Hubbell’s Unified Neutral Theory of Biodiversity at multiple sites, we tested for neutrality and defined immigration rates at different taxonomic levels. Bacterial abundance and diversity were measured and the amount of potential ice-nucleating bacteria was calculated. The chemical composition (anions, cations, organic acids) and particulate impurity load (elemental and organic carbon) of the winter and spring snowpack were also characterized. We used these data in addition to geographical information to assess possible niche-based effects on snow microbial communities using multivariate and variable partitioning analysis. RESULTS: While certain taxonomic signals were found to fit the neutral assembly model, clear evidence of niche-based selection was observed at most sites. Inorganic chemistry was not linked directly to diversity, but helped to identify predominant colonization sources and predict microbial abundance, which was tightly linked to sea spray. Organic acids were the most significant predictors of microbial diversity. At low organic acid concentrations, the snow microbial structure represented the seeding community closely, and evolved away from it at higher organic acid concentrations, with concomitant increases in bacterial numbers. CONCLUSIONS: These results indicate that environmental selection plays a significant role in structuring snow microbial communities and that future studies should focus on activity and growth. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40168-023-01473-6. BioMed Central 2023-03-02 /pmc/articles/PMC9979512/ /pubmed/36864462 http://dx.doi.org/10.1186/s40168-023-01473-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Keuschnig, Christoph
Vogel, Timothy M.
Barbaro, Elena
Spolaor, Andrea
Koziol, Krystyna
Björkman, Mats P.
Zdanowicz, Christian
Gallet, Jean-Charles
Luks, Bartłomiej
Layton, Rose
Larose, Catherine
Selection processes of Arctic seasonal glacier snowpack bacterial communities
title Selection processes of Arctic seasonal glacier snowpack bacterial communities
title_full Selection processes of Arctic seasonal glacier snowpack bacterial communities
title_fullStr Selection processes of Arctic seasonal glacier snowpack bacterial communities
title_full_unstemmed Selection processes of Arctic seasonal glacier snowpack bacterial communities
title_short Selection processes of Arctic seasonal glacier snowpack bacterial communities
title_sort selection processes of arctic seasonal glacier snowpack bacterial communities
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979512/
https://www.ncbi.nlm.nih.gov/pubmed/36864462
http://dx.doi.org/10.1186/s40168-023-01473-6
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