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WhoseEgg: classification software for invasive carp eggs

The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eg...

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Detalles Bibliográficos
Autores principales: Goode, Katherine, Weber, Michael J., Dixon, Philip M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979831/
https://www.ncbi.nlm.nih.gov/pubmed/36874980
http://dx.doi.org/10.7717/peerj.14787
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author Goode, Katherine
Weber, Michael J.
Dixon, Philip M.
author_facet Goode, Katherine
Weber, Michael J.
Dixon, Philip M.
author_sort Goode, Katherine
collection PubMed
description The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eggs based on morphometric egg characteristics. While random forests provide accurate predictions, they do not produce a simple formula for obtaining new predictions. Instead, individuals must have knowledge of the R coding language, limiting the individuals who can use the random forests for resource management. We present WhoseEgg: a web-based point-and-click application that allows non-R users to access random forests via a point and click interface to rapidly identify fish eggs with an objective of detecting invasive carp (Bighead, Grass, and Silver Carp) in the Upper Mississippi River basin. This article provides an overview of WhoseEgg, an example application, and future research directions.
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spelling pubmed-99798312023-03-03 WhoseEgg: classification software for invasive carp eggs Goode, Katherine Weber, Michael J. Dixon, Philip M. PeerJ Aquaculture, Fisheries and Fish Science The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eggs based on morphometric egg characteristics. While random forests provide accurate predictions, they do not produce a simple formula for obtaining new predictions. Instead, individuals must have knowledge of the R coding language, limiting the individuals who can use the random forests for resource management. We present WhoseEgg: a web-based point-and-click application that allows non-R users to access random forests via a point and click interface to rapidly identify fish eggs with an objective of detecting invasive carp (Bighead, Grass, and Silver Carp) in the Upper Mississippi River basin. This article provides an overview of WhoseEgg, an example application, and future research directions. PeerJ Inc. 2023-02-27 /pmc/articles/PMC9979831/ /pubmed/36874980 http://dx.doi.org/10.7717/peerj.14787 Text en © 2023 Goode et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Aquaculture, Fisheries and Fish Science
Goode, Katherine
Weber, Michael J.
Dixon, Philip M.
WhoseEgg: classification software for invasive carp eggs
title WhoseEgg: classification software for invasive carp eggs
title_full WhoseEgg: classification software for invasive carp eggs
title_fullStr WhoseEgg: classification software for invasive carp eggs
title_full_unstemmed WhoseEgg: classification software for invasive carp eggs
title_short WhoseEgg: classification software for invasive carp eggs
title_sort whoseegg: classification software for invasive carp eggs
topic Aquaculture, Fisheries and Fish Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979831/
https://www.ncbi.nlm.nih.gov/pubmed/36874980
http://dx.doi.org/10.7717/peerj.14787
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