Cargando…
WhoseEgg: classification software for invasive carp eggs
The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eg...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979831/ https://www.ncbi.nlm.nih.gov/pubmed/36874980 http://dx.doi.org/10.7717/peerj.14787 |
_version_ | 1784899797848686592 |
---|---|
author | Goode, Katherine Weber, Michael J. Dixon, Philip M. |
author_facet | Goode, Katherine Weber, Michael J. Dixon, Philip M. |
author_sort | Goode, Katherine |
collection | PubMed |
description | The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eggs based on morphometric egg characteristics. While random forests provide accurate predictions, they do not produce a simple formula for obtaining new predictions. Instead, individuals must have knowledge of the R coding language, limiting the individuals who can use the random forests for resource management. We present WhoseEgg: a web-based point-and-click application that allows non-R users to access random forests via a point and click interface to rapidly identify fish eggs with an objective of detecting invasive carp (Bighead, Grass, and Silver Carp) in the Upper Mississippi River basin. This article provides an overview of WhoseEgg, an example application, and future research directions. |
format | Online Article Text |
id | pubmed-9979831 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99798312023-03-03 WhoseEgg: classification software for invasive carp eggs Goode, Katherine Weber, Michael J. Dixon, Philip M. PeerJ Aquaculture, Fisheries and Fish Science The collection of fish eggs is a commonly used technique for monitoring invasive carp. Genetic identification is the most trusted method for identifying fish eggs but is expensive and slow. Recent work suggests random forest models could provide an inexpensive method for identifying invasive carp eggs based on morphometric egg characteristics. While random forests provide accurate predictions, they do not produce a simple formula for obtaining new predictions. Instead, individuals must have knowledge of the R coding language, limiting the individuals who can use the random forests for resource management. We present WhoseEgg: a web-based point-and-click application that allows non-R users to access random forests via a point and click interface to rapidly identify fish eggs with an objective of detecting invasive carp (Bighead, Grass, and Silver Carp) in the Upper Mississippi River basin. This article provides an overview of WhoseEgg, an example application, and future research directions. PeerJ Inc. 2023-02-27 /pmc/articles/PMC9979831/ /pubmed/36874980 http://dx.doi.org/10.7717/peerj.14787 Text en © 2023 Goode et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Aquaculture, Fisheries and Fish Science Goode, Katherine Weber, Michael J. Dixon, Philip M. WhoseEgg: classification software for invasive carp eggs |
title | WhoseEgg: classification software for invasive carp eggs |
title_full | WhoseEgg: classification software for invasive carp eggs |
title_fullStr | WhoseEgg: classification software for invasive carp eggs |
title_full_unstemmed | WhoseEgg: classification software for invasive carp eggs |
title_short | WhoseEgg: classification software for invasive carp eggs |
title_sort | whoseegg: classification software for invasive carp eggs |
topic | Aquaculture, Fisheries and Fish Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9979831/ https://www.ncbi.nlm.nih.gov/pubmed/36874980 http://dx.doi.org/10.7717/peerj.14787 |
work_keys_str_mv | AT goodekatherine whoseeggclassificationsoftwareforinvasivecarpeggs AT webermichaelj whoseeggclassificationsoftwareforinvasivecarpeggs AT dixonphilipm whoseeggclassificationsoftwareforinvasivecarpeggs |