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Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 3...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980020/ https://www.ncbi.nlm.nih.gov/pubmed/36876142 http://dx.doi.org/10.1080/23802359.2023.2183720 |
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author | Park, Tae-Ho |
author_facet | Park, Tae-Ho |
author_sort | Park, Tae-Ho |
collection | PubMed |
description | Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 37.86%. It comprises a large single copy (LSC) region of 86,057 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,593 bp. Additionally, 158 functional genes in the genome are identified, including 105 protein-coding genes, 8 ribosomal RNAs, and 45 transfer RNAs. Phylogenetic analysis revealed that S. iopetalum is grouped into a large clade with other Solanum species, including cultivated potatoes (S. tuberosum) and is closely related to Mexican Solanum species (S. stoloniferum, S. verrucosum, S. hougasii, S. hjertingii, and S. demissum). This study provides useful genomic information for future breeding and evolutionary studies of S. iopetalum and other Solanum species. |
format | Online Article Text |
id | pubmed-9980020 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-99800202023-03-03 Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives Park, Tae-Ho Mitochondrial DNA B Resour Plastome Announcement Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 37.86%. It comprises a large single copy (LSC) region of 86,057 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,593 bp. Additionally, 158 functional genes in the genome are identified, including 105 protein-coding genes, 8 ribosomal RNAs, and 45 transfer RNAs. Phylogenetic analysis revealed that S. iopetalum is grouped into a large clade with other Solanum species, including cultivated potatoes (S. tuberosum) and is closely related to Mexican Solanum species (S. stoloniferum, S. verrucosum, S. hougasii, S. hjertingii, and S. demissum). This study provides useful genomic information for future breeding and evolutionary studies of S. iopetalum and other Solanum species. Taylor & Francis 2023-02-28 /pmc/articles/PMC9980020/ /pubmed/36876142 http://dx.doi.org/10.1080/23802359.2023.2183720 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Park, Tae-Ho Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title | Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title_full | Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title_fullStr | Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title_full_unstemmed | Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title_short | Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives |
title_sort | complete chloroplast genome sequence of solanum iopetalum, one of the tuber-bearing wild potato relatives |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980020/ https://www.ncbi.nlm.nih.gov/pubmed/36876142 http://dx.doi.org/10.1080/23802359.2023.2183720 |
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