Cargando…

Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives

Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 3...

Descripción completa

Detalles Bibliográficos
Autor principal: Park, Tae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980020/
https://www.ncbi.nlm.nih.gov/pubmed/36876142
http://dx.doi.org/10.1080/23802359.2023.2183720
_version_ 1784899836147924992
author Park, Tae-Ho
author_facet Park, Tae-Ho
author_sort Park, Tae-Ho
collection PubMed
description Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 37.86%. It comprises a large single copy (LSC) region of 86,057 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,593 bp. Additionally, 158 functional genes in the genome are identified, including 105 protein-coding genes, 8 ribosomal RNAs, and 45 transfer RNAs. Phylogenetic analysis revealed that S. iopetalum is grouped into a large clade with other Solanum species, including cultivated potatoes (S. tuberosum) and is closely related to Mexican Solanum species (S. stoloniferum, S. verrucosum, S. hougasii, S. hjertingii, and S. demissum). This study provides useful genomic information for future breeding and evolutionary studies of S. iopetalum and other Solanum species.
format Online
Article
Text
id pubmed-9980020
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-99800202023-03-03 Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives Park, Tae-Ho Mitochondrial DNA B Resour Plastome Announcement Solanum iopetalum belongs to the Solanaceae family and is one of the tuber-bearing wild Solanum species. In this study, chloroplast genome sequencing of the species, completed with Illumina sequencing technology, is presented. The length of the chloroplast genome is 155,625 bp with a GC content of 37.86%. It comprises a large single copy (LSC) region of 86,057 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,593 bp. Additionally, 158 functional genes in the genome are identified, including 105 protein-coding genes, 8 ribosomal RNAs, and 45 transfer RNAs. Phylogenetic analysis revealed that S. iopetalum is grouped into a large clade with other Solanum species, including cultivated potatoes (S. tuberosum) and is closely related to Mexican Solanum species (S. stoloniferum, S. verrucosum, S. hougasii, S. hjertingii, and S. demissum). This study provides useful genomic information for future breeding and evolutionary studies of S. iopetalum and other Solanum species. Taylor & Francis 2023-02-28 /pmc/articles/PMC9980020/ /pubmed/36876142 http://dx.doi.org/10.1080/23802359.2023.2183720 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Park, Tae-Ho
Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title_full Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title_fullStr Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title_full_unstemmed Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title_short Complete chloroplast genome sequence of Solanum iopetalum, one of the tuber-bearing wild potato relatives
title_sort complete chloroplast genome sequence of solanum iopetalum, one of the tuber-bearing wild potato relatives
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980020/
https://www.ncbi.nlm.nih.gov/pubmed/36876142
http://dx.doi.org/10.1080/23802359.2023.2183720
work_keys_str_mv AT parktaeho completechloroplastgenomesequenceofsolanumiopetalumoneofthetuberbearingwildpotatorelatives