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Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging

Diffusion Spectrum Imaging (DSI) using dense Cartesian sampling of q-space has been shown to provide important advantages for modeling complex white matter architecture. However, its adoption has been limited by the lengthy acquisition time required. Sparser sampling of q-space combined with compres...

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Autores principales: Radhakrishnan, Hamsanandini, Zhao, Chenying, Sydnor, Valerie J., Baller, Erica B., Cook, Philip A., Fair, Damien, Giesbrecht, Barry, Larsen, Bart, Murtha, Kristin, Roalf, David R., Rush-Goebel, Sage, Shinohara, Russell, Shou, Haochang, Tisdall, M. Dylan, Vettel, Jean, Grafton, Scott, Cieslak, Matthew, Satterthwaite, Theodore
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980087/
https://www.ncbi.nlm.nih.gov/pubmed/36865219
http://dx.doi.org/10.1101/2023.02.22.529546
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author Radhakrishnan, Hamsanandini
Zhao, Chenying
Sydnor, Valerie J.
Baller, Erica B.
Cook, Philip A.
Fair, Damien
Giesbrecht, Barry
Larsen, Bart
Murtha, Kristin
Roalf, David R.
Rush-Goebel, Sage
Shinohara, Russell
Shou, Haochang
Tisdall, M. Dylan
Vettel, Jean
Grafton, Scott
Cieslak, Matthew
Satterthwaite, Theodore
author_facet Radhakrishnan, Hamsanandini
Zhao, Chenying
Sydnor, Valerie J.
Baller, Erica B.
Cook, Philip A.
Fair, Damien
Giesbrecht, Barry
Larsen, Bart
Murtha, Kristin
Roalf, David R.
Rush-Goebel, Sage
Shinohara, Russell
Shou, Haochang
Tisdall, M. Dylan
Vettel, Jean
Grafton, Scott
Cieslak, Matthew
Satterthwaite, Theodore
author_sort Radhakrishnan, Hamsanandini
collection PubMed
description Diffusion Spectrum Imaging (DSI) using dense Cartesian sampling of q-space has been shown to provide important advantages for modeling complex white matter architecture. However, its adoption has been limited by the lengthy acquisition time required. Sparser sampling of q-space combined with compressed sensing (CS) reconstruction techniques has been proposed as a way to reduce the scan time of DSI acquisitions. However prior studies have mainly evaluated CS-DSI in post-mortem or non-human data. At present, the capacity for CS-DSI to provide accurate and reliable measures of white matter anatomy and microstructure in the living human brain remains unclear. We evaluated the accuracy and inter-scan reliability of 6 different CS-DSI schemes that provided up to 80% reductions in scan time compared to a full DSI scheme. We capitalized on a dataset of twenty-six participants who were scanned over eight independent sessions using a full DSI scheme. From this full DSI scheme, we subsampled images to create a range of CS-DSI images. This allowed us to compare the accuracy and inter-scan reliability of derived measures of white matter structure (bundle segmentation, voxel-wise scalar maps) produced by the CS-DSI and the full DSI schemes. We found that CS-DSI estimates of both bundle segmentations and voxel-wise scalars were nearly as accurate and reliable as those generated by the full DSI scheme. Moreover, we found that the accuracy and reliability of CS-DSI was higher in white matter bundles that were more reliably segmented by the full DSI scheme. As a final step, we replicated the accuracy of CS-DSI in a prospectively acquired dataset (n=20, scanned once). Together, these results illustrate the utility of CS-DSI for reliably delineating in vivo white matter architecture in a fraction of the scan time, underscoring its promise for both clinical and research applications.
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spelling pubmed-99800872023-03-03 Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging Radhakrishnan, Hamsanandini Zhao, Chenying Sydnor, Valerie J. Baller, Erica B. Cook, Philip A. Fair, Damien Giesbrecht, Barry Larsen, Bart Murtha, Kristin Roalf, David R. Rush-Goebel, Sage Shinohara, Russell Shou, Haochang Tisdall, M. Dylan Vettel, Jean Grafton, Scott Cieslak, Matthew Satterthwaite, Theodore bioRxiv Article Diffusion Spectrum Imaging (DSI) using dense Cartesian sampling of q-space has been shown to provide important advantages for modeling complex white matter architecture. However, its adoption has been limited by the lengthy acquisition time required. Sparser sampling of q-space combined with compressed sensing (CS) reconstruction techniques has been proposed as a way to reduce the scan time of DSI acquisitions. However prior studies have mainly evaluated CS-DSI in post-mortem or non-human data. At present, the capacity for CS-DSI to provide accurate and reliable measures of white matter anatomy and microstructure in the living human brain remains unclear. We evaluated the accuracy and inter-scan reliability of 6 different CS-DSI schemes that provided up to 80% reductions in scan time compared to a full DSI scheme. We capitalized on a dataset of twenty-six participants who were scanned over eight independent sessions using a full DSI scheme. From this full DSI scheme, we subsampled images to create a range of CS-DSI images. This allowed us to compare the accuracy and inter-scan reliability of derived measures of white matter structure (bundle segmentation, voxel-wise scalar maps) produced by the CS-DSI and the full DSI schemes. We found that CS-DSI estimates of both bundle segmentations and voxel-wise scalars were nearly as accurate and reliable as those generated by the full DSI scheme. Moreover, we found that the accuracy and reliability of CS-DSI was higher in white matter bundles that were more reliably segmented by the full DSI scheme. As a final step, we replicated the accuracy of CS-DSI in a prospectively acquired dataset (n=20, scanned once). Together, these results illustrate the utility of CS-DSI for reliably delineating in vivo white matter architecture in a fraction of the scan time, underscoring its promise for both clinical and research applications. Cold Spring Harbor Laboratory 2023-02-23 /pmc/articles/PMC9980087/ /pubmed/36865219 http://dx.doi.org/10.1101/2023.02.22.529546 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Radhakrishnan, Hamsanandini
Zhao, Chenying
Sydnor, Valerie J.
Baller, Erica B.
Cook, Philip A.
Fair, Damien
Giesbrecht, Barry
Larsen, Bart
Murtha, Kristin
Roalf, David R.
Rush-Goebel, Sage
Shinohara, Russell
Shou, Haochang
Tisdall, M. Dylan
Vettel, Jean
Grafton, Scott
Cieslak, Matthew
Satterthwaite, Theodore
Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title_full Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title_fullStr Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title_full_unstemmed Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title_short Establishing the Validity of Compressed Sensing Diffusion Spectrum Imaging
title_sort establishing the validity of compressed sensing diffusion spectrum imaging
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980087/
https://www.ncbi.nlm.nih.gov/pubmed/36865219
http://dx.doi.org/10.1101/2023.02.22.529546
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