Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis

Cardinal v3 is an open source software for reproducible analysis of mass spectrometry imaging experiments. A major update from its previous versions, Cardinal v3 supports most mass spectrometry imaging workflows. Its analytical capabilities include advanced data processing such as mass re-calibratio...

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Detalles Bibliográficos
Autores principales: Bemis, Kylie Ariel, Föll, Melanie Christine, Guo, Dan, Lakkimsetty, Sai Srikanth, Vitek, Olga
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980127/
https://www.ncbi.nlm.nih.gov/pubmed/36865170
http://dx.doi.org/10.1101/2023.02.20.529280
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author Bemis, Kylie Ariel
Föll, Melanie Christine
Guo, Dan
Lakkimsetty, Sai Srikanth
Vitek, Olga
author_facet Bemis, Kylie Ariel
Föll, Melanie Christine
Guo, Dan
Lakkimsetty, Sai Srikanth
Vitek, Olga
author_sort Bemis, Kylie Ariel
collection PubMed
description Cardinal v3 is an open source software for reproducible analysis of mass spectrometry imaging experiments. A major update from its previous versions, Cardinal v3 supports most mass spectrometry imaging workflows. Its analytical capabilities include advanced data processing such as mass re-calibration, advanced statistical analyses such as single-ion segmentation and rough annotation-based classification, and memory-efficient analyses of large-scale multi-tissue experiments.
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spelling pubmed-99801272023-03-03 Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis Bemis, Kylie Ariel Föll, Melanie Christine Guo, Dan Lakkimsetty, Sai Srikanth Vitek, Olga bioRxiv Article Cardinal v3 is an open source software for reproducible analysis of mass spectrometry imaging experiments. A major update from its previous versions, Cardinal v3 supports most mass spectrometry imaging workflows. Its analytical capabilities include advanced data processing such as mass re-calibration, advanced statistical analyses such as single-ion segmentation and rough annotation-based classification, and memory-efficient analyses of large-scale multi-tissue experiments. Cold Spring Harbor Laboratory 2023-02-21 /pmc/articles/PMC9980127/ /pubmed/36865170 http://dx.doi.org/10.1101/2023.02.20.529280 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Bemis, Kylie Ariel
Föll, Melanie Christine
Guo, Dan
Lakkimsetty, Sai Srikanth
Vitek, Olga
Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title_full Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title_fullStr Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title_full_unstemmed Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title_short Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
title_sort cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980127/
https://www.ncbi.nlm.nih.gov/pubmed/36865170
http://dx.doi.org/10.1101/2023.02.20.529280
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