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A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya

The demand for well-trained bioinformaticians to support genomics research continues to rise. Unfortunately, undergraduate training in Kenya does not prepare students for specialization in bioinformatics. Graduates are often unaware of the career opportunities in bioinformatics, and those who are ma...

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Autores principales: Nanjala, Ruth, Nyasimi, Festus, Masiga, Daniel, Kibet, Caleb Kipkurui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980751/
https://www.ncbi.nlm.nih.gov/pubmed/36862660
http://dx.doi.org/10.1371/journal.pcbi.1010904
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author Nanjala, Ruth
Nyasimi, Festus
Masiga, Daniel
Kibet, Caleb Kipkurui
author_facet Nanjala, Ruth
Nyasimi, Festus
Masiga, Daniel
Kibet, Caleb Kipkurui
author_sort Nanjala, Ruth
collection PubMed
description The demand for well-trained bioinformaticians to support genomics research continues to rise. Unfortunately, undergraduate training in Kenya does not prepare students for specialization in bioinformatics. Graduates are often unaware of the career opportunities in bioinformatics, and those who are may lack mentors to help them choose a specialization. The Bioinformatics Mentorship and Incubation Program seeks to bridge the gap by laying the foundation for a bioinformatics training pipeline using project-based learning. The program selects six participants through an intensive open recruitment exercise for highly competitive students to join the program for four months. The six interns undergo intensive training within the first one and a half months before being assigned to mini-projects. We track the progress of the interns weekly through code review sessions and a final presentation at the end of the four months. We have trained five cohorts, most of whom have secured master’s scholarships within and outside the country and job opportunities. We demonstrate the benefit of structured mentorship using project-based learning in filling the training gap after undergraduate programs to generate well-trained bioinformaticians who are competitive in graduate programs and bioinformatics jobs.
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spelling pubmed-99807512023-03-03 A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya Nanjala, Ruth Nyasimi, Festus Masiga, Daniel Kibet, Caleb Kipkurui PLoS Comput Biol Education The demand for well-trained bioinformaticians to support genomics research continues to rise. Unfortunately, undergraduate training in Kenya does not prepare students for specialization in bioinformatics. Graduates are often unaware of the career opportunities in bioinformatics, and those who are may lack mentors to help them choose a specialization. The Bioinformatics Mentorship and Incubation Program seeks to bridge the gap by laying the foundation for a bioinformatics training pipeline using project-based learning. The program selects six participants through an intensive open recruitment exercise for highly competitive students to join the program for four months. The six interns undergo intensive training within the first one and a half months before being assigned to mini-projects. We track the progress of the interns weekly through code review sessions and a final presentation at the end of the four months. We have trained five cohorts, most of whom have secured master’s scholarships within and outside the country and job opportunities. We demonstrate the benefit of structured mentorship using project-based learning in filling the training gap after undergraduate programs to generate well-trained bioinformaticians who are competitive in graduate programs and bioinformatics jobs. Public Library of Science 2023-03-02 /pmc/articles/PMC9980751/ /pubmed/36862660 http://dx.doi.org/10.1371/journal.pcbi.1010904 Text en © 2023 Nanjala et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Education
Nanjala, Ruth
Nyasimi, Festus
Masiga, Daniel
Kibet, Caleb Kipkurui
A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title_full A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title_fullStr A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title_full_unstemmed A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title_short A mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in Kenya
title_sort mentorship and incubation program using project-based learning to build a professional bioinformatics pipeline in kenya
topic Education
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980751/
https://www.ncbi.nlm.nih.gov/pubmed/36862660
http://dx.doi.org/10.1371/journal.pcbi.1010904
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