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COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images

The pandemic caused by the coronavirus disease 2019 (COVID-19) has continuously wreaked havoc on human health. Computer-aided diagnosis (CAD) system based on chest computed tomography (CT) has been a hotspot option for COVID-19 diagnosis. However, due to the high cost of data annotation in the medic...

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Detalles Bibliográficos
Autores principales: Wu, Yanfu, Dai, Qun, Lu, Han
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9981271/
https://www.ncbi.nlm.nih.gov/pubmed/36883063
http://dx.doi.org/10.1016/j.chemolab.2023.104799
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author Wu, Yanfu
Dai, Qun
Lu, Han
author_facet Wu, Yanfu
Dai, Qun
Lu, Han
author_sort Wu, Yanfu
collection PubMed
description The pandemic caused by the coronavirus disease 2019 (COVID-19) has continuously wreaked havoc on human health. Computer-aided diagnosis (CAD) system based on chest computed tomography (CT) has been a hotspot option for COVID-19 diagnosis. However, due to the high cost of data annotation in the medical field, it happens that the number of unannotated data is much larger than the annotated data. Meanwhile, having a highly accurate CAD system always requires a large amount of labeled data training. To solve this problem while meeting the needs, this paper presents an automated and accurate COVID-19 diagnosis system using few labeled CT images. The overall framework of this system is based on the self-supervised contrastive learning (SSCL). Based on the framework, our enhancement of our system can be summarized as follows. 1) We integrated a two-dimensional discrete wavelet transform with contrastive learning to fully use all the features from the images. 2) We use the recently proposed COVID-Net as the encoder, with a redesign to target the specificity of the task and learning efficiency. 3) A new pretraining strategy based on contrastive learning is applied for broader generalization ability. 4) An additional auxiliary task is exerted to promote performance during classification. The final experimental result of our system attained 93.55%, 91.59%, 96.92% and 94.18% for accuracy, recall, precision, and F1-score respectively. By comparing results with the existing schemes, we demonstrate the performance enhancement and superiority of our proposed system.
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spelling pubmed-99812712023-03-03 COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images Wu, Yanfu Dai, Qun Lu, Han Chemometr Intell Lab Syst Article The pandemic caused by the coronavirus disease 2019 (COVID-19) has continuously wreaked havoc on human health. Computer-aided diagnosis (CAD) system based on chest computed tomography (CT) has been a hotspot option for COVID-19 diagnosis. However, due to the high cost of data annotation in the medical field, it happens that the number of unannotated data is much larger than the annotated data. Meanwhile, having a highly accurate CAD system always requires a large amount of labeled data training. To solve this problem while meeting the needs, this paper presents an automated and accurate COVID-19 diagnosis system using few labeled CT images. The overall framework of this system is based on the self-supervised contrastive learning (SSCL). Based on the framework, our enhancement of our system can be summarized as follows. 1) We integrated a two-dimensional discrete wavelet transform with contrastive learning to fully use all the features from the images. 2) We use the recently proposed COVID-Net as the encoder, with a redesign to target the specificity of the task and learning efficiency. 3) A new pretraining strategy based on contrastive learning is applied for broader generalization ability. 4) An additional auxiliary task is exerted to promote performance during classification. The final experimental result of our system attained 93.55%, 91.59%, 96.92% and 94.18% for accuracy, recall, precision, and F1-score respectively. By comparing results with the existing schemes, we demonstrate the performance enhancement and superiority of our proposed system. Elsevier B.V. 2023-05-15 2023-03-03 /pmc/articles/PMC9981271/ /pubmed/36883063 http://dx.doi.org/10.1016/j.chemolab.2023.104799 Text en © 2023 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Wu, Yanfu
Dai, Qun
Lu, Han
COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title_full COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title_fullStr COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title_full_unstemmed COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title_short COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images
title_sort covid-19 diagnosis utilizing wavelet-based contrastive learning with chest ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9981271/
https://www.ncbi.nlm.nih.gov/pubmed/36883063
http://dx.doi.org/10.1016/j.chemolab.2023.104799
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