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Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center
OBJECTIVE: This study aims to assess the effectiveness of the Gradient Boosting (GB) algorithm on glioma prognosis prediction and to explore new predictive models for glioma patient survival after tumor resection. METHODS: A cohort of 776 glioma cases (WHO grades II–IV) between 2010 and 2017 was obt...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9981970/ https://www.ncbi.nlm.nih.gov/pubmed/36873808 http://dx.doi.org/10.3389/fsurg.2022.975022 |
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author | Li, Yushan Ye, Maodong Jia, Baolong Chen, Linwei Zhou, Zubang |
author_facet | Li, Yushan Ye, Maodong Jia, Baolong Chen, Linwei Zhou, Zubang |
author_sort | Li, Yushan |
collection | PubMed |
description | OBJECTIVE: This study aims to assess the effectiveness of the Gradient Boosting (GB) algorithm on glioma prognosis prediction and to explore new predictive models for glioma patient survival after tumor resection. METHODS: A cohort of 776 glioma cases (WHO grades II–IV) between 2010 and 2017 was obtained. Clinical characteristics and biomarker information were reviewed. Subsequently, we constructed the conventional Cox survival model and three different supervised machine learning models, including support vector machine (SVM), random survival forest (RSF), Tree GB, and Component GB. Then, the model performance was compared with each other. At last, we also assessed the feature importance of models. RESULTS: The concordance indexes of the conventional survival model, SVM, RSF, Tree GB, and Component GB were 0.755, 0.787, 0.830, 0.837, and 0.840, respectively. All areas under the cumulative receiver operating characteristic curve of both GB models were above 0.800 at different survival times. Their calibration curves showed good calibration of survival prediction. Meanwhile, the analysis of feature importance revealed Karnofsky performance status, age, tumor subtype, extent of resection, and so on as crucial predictive factors. CONCLUSION: Gradient Boosting models performed better in predicting glioma patient survival after tumor resection than other models. |
format | Online Article Text |
id | pubmed-9981970 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99819702023-03-04 Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center Li, Yushan Ye, Maodong Jia, Baolong Chen, Linwei Zhou, Zubang Front Surg Surgery OBJECTIVE: This study aims to assess the effectiveness of the Gradient Boosting (GB) algorithm on glioma prognosis prediction and to explore new predictive models for glioma patient survival after tumor resection. METHODS: A cohort of 776 glioma cases (WHO grades II–IV) between 2010 and 2017 was obtained. Clinical characteristics and biomarker information were reviewed. Subsequently, we constructed the conventional Cox survival model and three different supervised machine learning models, including support vector machine (SVM), random survival forest (RSF), Tree GB, and Component GB. Then, the model performance was compared with each other. At last, we also assessed the feature importance of models. RESULTS: The concordance indexes of the conventional survival model, SVM, RSF, Tree GB, and Component GB were 0.755, 0.787, 0.830, 0.837, and 0.840, respectively. All areas under the cumulative receiver operating characteristic curve of both GB models were above 0.800 at different survival times. Their calibration curves showed good calibration of survival prediction. Meanwhile, the analysis of feature importance revealed Karnofsky performance status, age, tumor subtype, extent of resection, and so on as crucial predictive factors. CONCLUSION: Gradient Boosting models performed better in predicting glioma patient survival after tumor resection than other models. Frontiers Media S.A. 2023-02-17 /pmc/articles/PMC9981970/ /pubmed/36873808 http://dx.doi.org/10.3389/fsurg.2022.975022 Text en © 2023 Li, Ye, Jia, Chen and Zhou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Surgery Li, Yushan Ye, Maodong Jia, Baolong Chen, Linwei Zhou, Zubang Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title | Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title_full | Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title_fullStr | Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title_full_unstemmed | Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title_short | Practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: Experiences in a high-volume Chinese center |
title_sort | practice of the new supervised machine learning predictive analytics for glioma patient survival after tumor resection: experiences in a high-volume chinese center |
topic | Surgery |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9981970/ https://www.ncbi.nlm.nih.gov/pubmed/36873808 http://dx.doi.org/10.3389/fsurg.2022.975022 |
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