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Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults
Nonalcoholic fatty liver disease (NAFLD) is one of major causes of end-stage liver disease in the coming decades, but it shows few symptoms until it develops into cirrhosis. We aim to develop classification models with machine learning to screen NAFLD patients among general adults. This study includ...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984396/ https://www.ncbi.nlm.nih.gov/pubmed/36869105 http://dx.doi.org/10.1038/s41598-023-30750-5 |
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author | Qin, Shenghua Hou, Xiaomin Wen, Yuan Wang, Chunqing Tan, Xiaxian Tian, Hao Ao, Qingqing Li, Jingze Chu, Shuyuan |
author_facet | Qin, Shenghua Hou, Xiaomin Wen, Yuan Wang, Chunqing Tan, Xiaxian Tian, Hao Ao, Qingqing Li, Jingze Chu, Shuyuan |
author_sort | Qin, Shenghua |
collection | PubMed |
description | Nonalcoholic fatty liver disease (NAFLD) is one of major causes of end-stage liver disease in the coming decades, but it shows few symptoms until it develops into cirrhosis. We aim to develop classification models with machine learning to screen NAFLD patients among general adults. This study included 14,439 adults who took health examination. We developed classification models to classify subjects with or without NAFLD using decision tree, random forest (RF), extreme gradient boosting (XGBoost) and support vector machine (SVM). The classifier with SVM was showed the best performance with the highest accuracy (0.801), positive predictive value (PPV) (0.795), F1 score (0.795), Kappa score (0.508) and area under the precision-recall curve (AUPRC) (0.712), and the second top of area under receiver operating characteristic curve (AUROC) (0.850). The second-best classifier was RF model, which was showed the highest AUROC (0.852) and the second top of accuracy (0.789), PPV (0.782), F1 score (0.782), Kappa score (0.478) and AUPRC (0.708). In conclusion, the classifier with SVM is the best one to screen NAFLD in general population based on the results from physical examination and blood testing, followed by the classifier with RF. Those classifiers have a potential to screen NAFLD in general population for physician and primary care doctors, which could benefit to NAFLD patients from early diagnosis. |
format | Online Article Text |
id | pubmed-9984396 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99843962023-03-05 Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults Qin, Shenghua Hou, Xiaomin Wen, Yuan Wang, Chunqing Tan, Xiaxian Tian, Hao Ao, Qingqing Li, Jingze Chu, Shuyuan Sci Rep Article Nonalcoholic fatty liver disease (NAFLD) is one of major causes of end-stage liver disease in the coming decades, but it shows few symptoms until it develops into cirrhosis. We aim to develop classification models with machine learning to screen NAFLD patients among general adults. This study included 14,439 adults who took health examination. We developed classification models to classify subjects with or without NAFLD using decision tree, random forest (RF), extreme gradient boosting (XGBoost) and support vector machine (SVM). The classifier with SVM was showed the best performance with the highest accuracy (0.801), positive predictive value (PPV) (0.795), F1 score (0.795), Kappa score (0.508) and area under the precision-recall curve (AUPRC) (0.712), and the second top of area under receiver operating characteristic curve (AUROC) (0.850). The second-best classifier was RF model, which was showed the highest AUROC (0.852) and the second top of accuracy (0.789), PPV (0.782), F1 score (0.782), Kappa score (0.478) and AUPRC (0.708). In conclusion, the classifier with SVM is the best one to screen NAFLD in general population based on the results from physical examination and blood testing, followed by the classifier with RF. Those classifiers have a potential to screen NAFLD in general population for physician and primary care doctors, which could benefit to NAFLD patients from early diagnosis. Nature Publishing Group UK 2023-03-03 /pmc/articles/PMC9984396/ /pubmed/36869105 http://dx.doi.org/10.1038/s41598-023-30750-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Qin, Shenghua Hou, Xiaomin Wen, Yuan Wang, Chunqing Tan, Xiaxian Tian, Hao Ao, Qingqing Li, Jingze Chu, Shuyuan Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title | Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title_full | Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title_fullStr | Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title_full_unstemmed | Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title_short | Machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
title_sort | machine learning classifiers for screening nonalcoholic fatty liver disease in general adults |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984396/ https://www.ncbi.nlm.nih.gov/pubmed/36869105 http://dx.doi.org/10.1038/s41598-023-30750-5 |
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