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Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report

BACKGROUND: Digital sensing devices have become an increasingly important component of modern biomedical research, as they help provide objective insights into individuals’ everyday behavior in terms of changes in motor and nonmotor symptoms. However, there are significant barriers to the adoption o...

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Autores principales: Single, Michael, Bruhin, Lena C, Schütz, Narayan, Naef, Aileen C, Hegi, Heinz, Reuse, Pascal, Schindler, Kaspar A, Krack, Paul, Wiest, Roland, Chan, Andrew, Nef, Tobias, Gerber, Stephan M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985000/
https://www.ncbi.nlm.nih.gov/pubmed/36800219
http://dx.doi.org/10.2196/43092
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author Single, Michael
Bruhin, Lena C
Schütz, Narayan
Naef, Aileen C
Hegi, Heinz
Reuse, Pascal
Schindler, Kaspar A
Krack, Paul
Wiest, Roland
Chan, Andrew
Nef, Tobias
Gerber, Stephan M
author_facet Single, Michael
Bruhin, Lena C
Schütz, Narayan
Naef, Aileen C
Hegi, Heinz
Reuse, Pascal
Schindler, Kaspar A
Krack, Paul
Wiest, Roland
Chan, Andrew
Nef, Tobias
Gerber, Stephan M
author_sort Single, Michael
collection PubMed
description BACKGROUND: Digital sensing devices have become an increasingly important component of modern biomedical research, as they help provide objective insights into individuals’ everyday behavior in terms of changes in motor and nonmotor symptoms. However, there are significant barriers to the adoption of sensor-enhanced biomedical solutions in terms of both technical expertise and associated costs. The currently available solutions neither allow easy integration of custom sensing devices nor offer a practicable methodology in cases of limited resources. This has become particularly relevant, given the need for real-time sensor data that could help lower health care costs by reducing the frequency of clinical assessments performed by specialists and improve access to health assessments (eg, for people living in remote areas or older adults living at home). OBJECTIVE: The objective of this paper is to detail the end-to-end development of a novel sensor recording software system that supports the integration of heterogeneous sensor technologies, runs as an on-demand service on consumer-grade hardware to build sensor systems, and can be easily used to reliably record longitudinal sensor measurements in research settings. METHODS: The proposed software system is based on a server-client architecture, consisting of multiple self-contained microservices that communicated with each other (eg, the web server transfers data to a database instance) and were implemented as Docker containers. The design of the software is based on state-of-the-art open-source technologies (eg, Node.js or MongoDB), which fulfill nonfunctional requirements and reduce associated costs. A series of programs to facilitate the use of the software were documented. To demonstrate performance, the software was tested in 3 studies (2 gait studies and 1 behavioral study assessing activities of daily living) that ran between 2 and 225 days, with a total of 114 participants. We used descriptive statistics to evaluate longitudinal measurements for reliability, error rates, throughput rates, latency, and usability (with the System Usability Scale [SUS] and the Post-Study System Usability Questionnaire [PSSUQ]). RESULTS: Three qualitative features (event annotation program, sample delay analysis program, and monitoring dashboard) were elaborated and realized as integrated programs. Our quantitative findings demonstrate that the system operates reliably on consumer-grade hardware, even across multiple months (>420 days), providing high throughput (2000 requests per second) with a low latency and error rate (<0.002%). In addition, the results of the usability tests indicate that the system is effective, efficient, and satisfactory to use (mean usability ratings for the SUS and PSSUQ were 89.5 and 1.62, respectively). CONCLUSIONS: Overall, this sensor recording software could be leveraged to test sensor devices, as well as to develop and validate algorithms that are able to extract digital measures (eg, gait parameters or actigraphy). The proposed software could help significantly reduce barriers related to sensor-enhanced biomedical research and allow researchers to focus on the research questions at hand rather than on developing recording technologies.
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spelling pubmed-99850002023-03-05 Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report Single, Michael Bruhin, Lena C Schütz, Narayan Naef, Aileen C Hegi, Heinz Reuse, Pascal Schindler, Kaspar A Krack, Paul Wiest, Roland Chan, Andrew Nef, Tobias Gerber, Stephan M JMIR Form Res Original Paper BACKGROUND: Digital sensing devices have become an increasingly important component of modern biomedical research, as they help provide objective insights into individuals’ everyday behavior in terms of changes in motor and nonmotor symptoms. However, there are significant barriers to the adoption of sensor-enhanced biomedical solutions in terms of both technical expertise and associated costs. The currently available solutions neither allow easy integration of custom sensing devices nor offer a practicable methodology in cases of limited resources. This has become particularly relevant, given the need for real-time sensor data that could help lower health care costs by reducing the frequency of clinical assessments performed by specialists and improve access to health assessments (eg, for people living in remote areas or older adults living at home). OBJECTIVE: The objective of this paper is to detail the end-to-end development of a novel sensor recording software system that supports the integration of heterogeneous sensor technologies, runs as an on-demand service on consumer-grade hardware to build sensor systems, and can be easily used to reliably record longitudinal sensor measurements in research settings. METHODS: The proposed software system is based on a server-client architecture, consisting of multiple self-contained microservices that communicated with each other (eg, the web server transfers data to a database instance) and were implemented as Docker containers. The design of the software is based on state-of-the-art open-source technologies (eg, Node.js or MongoDB), which fulfill nonfunctional requirements and reduce associated costs. A series of programs to facilitate the use of the software were documented. To demonstrate performance, the software was tested in 3 studies (2 gait studies and 1 behavioral study assessing activities of daily living) that ran between 2 and 225 days, with a total of 114 participants. We used descriptive statistics to evaluate longitudinal measurements for reliability, error rates, throughput rates, latency, and usability (with the System Usability Scale [SUS] and the Post-Study System Usability Questionnaire [PSSUQ]). RESULTS: Three qualitative features (event annotation program, sample delay analysis program, and monitoring dashboard) were elaborated and realized as integrated programs. Our quantitative findings demonstrate that the system operates reliably on consumer-grade hardware, even across multiple months (>420 days), providing high throughput (2000 requests per second) with a low latency and error rate (<0.002%). In addition, the results of the usability tests indicate that the system is effective, efficient, and satisfactory to use (mean usability ratings for the SUS and PSSUQ were 89.5 and 1.62, respectively). CONCLUSIONS: Overall, this sensor recording software could be leveraged to test sensor devices, as well as to develop and validate algorithms that are able to extract digital measures (eg, gait parameters or actigraphy). The proposed software could help significantly reduce barriers related to sensor-enhanced biomedical research and allow researchers to focus on the research questions at hand rather than on developing recording technologies. JMIR Publications 2023-02-17 /pmc/articles/PMC9985000/ /pubmed/36800219 http://dx.doi.org/10.2196/43092 Text en ©Michael Single, Lena C Bruhin, Narayan Schütz, Aileen C Naef, Heinz Hegi, Pascal Reuse, Kaspar A Schindler, Paul Krack, Roland Wiest, Andrew Chan, Tobias Nef, Stephan M Gerber. Originally published in JMIR Formative Research (https://formative.jmir.org), 17.02.2023. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Formative Research, is properly cited. The complete bibliographic information, a link to the original publication on https://formative.jmir.org, as well as this copyright and license information must be included.
spellingShingle Original Paper
Single, Michael
Bruhin, Lena C
Schütz, Narayan
Naef, Aileen C
Hegi, Heinz
Reuse, Pascal
Schindler, Kaspar A
Krack, Paul
Wiest, Roland
Chan, Andrew
Nef, Tobias
Gerber, Stephan M
Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title_full Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title_fullStr Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title_full_unstemmed Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title_short Development of an Open-source and Lightweight Sensor Recording Software System for Conducting Biomedical Research: Technical Report
title_sort development of an open-source and lightweight sensor recording software system for conducting biomedical research: technical report
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985000/
https://www.ncbi.nlm.nih.gov/pubmed/36800219
http://dx.doi.org/10.2196/43092
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