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Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them
3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures o...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985946/ https://www.ncbi.nlm.nih.gov/pubmed/36871292 http://dx.doi.org/10.1107/S2053229623001468 |
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author | Linden, Anthony Bucher, Christoph B. Gubler, Ralf Villalgordo, José M. Heimgartner, Heinz |
author_facet | Linden, Anthony Bucher, Christoph B. Gubler, Ralf Villalgordo, José M. Heimgartner, Heinz |
author_sort | Linden, Anthony |
collection | PubMed |
description | 3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2R)- and (2S)-2-ethyl-3-[(2S)-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2H-azirine, C(23)H(28)N(2)O, 11, and 2-benzyl-3-(N-methyl-N-phenylamino)-2-phenyl-2H-azirine, C(22)H(20)N(2), 12, and the third as its diastereoisomeric trans-PdCl(2) complex, trans-dichlorido[(2R)-2-ethyl-2-methyl-3-(X)-2H-azirine][(2S)-2-ethyl-2-methyl-3-(X)-2H-azirine]palladium(II), where X = N-{[(1S,2S,5S)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}-N-phenylamino, [PdCl(2)(C(21)H(30)N(2))(2)], 14, have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2H-azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans-PdCl(2) complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically. |
format | Online Article Text |
id | pubmed-9985946 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-99859462023-03-06 Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them Linden, Anthony Bucher, Christoph B. Gubler, Ralf Villalgordo, José M. Heimgartner, Heinz Acta Crystallogr C Struct Chem Research Papers 3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2R)- and (2S)-2-ethyl-3-[(2S)-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2H-azirine, C(23)H(28)N(2)O, 11, and 2-benzyl-3-(N-methyl-N-phenylamino)-2-phenyl-2H-azirine, C(22)H(20)N(2), 12, and the third as its diastereoisomeric trans-PdCl(2) complex, trans-dichlorido[(2R)-2-ethyl-2-methyl-3-(X)-2H-azirine][(2S)-2-ethyl-2-methyl-3-(X)-2H-azirine]palladium(II), where X = N-{[(1S,2S,5S)-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}-N-phenylamino, [PdCl(2)(C(21)H(30)N(2))(2)], 14, have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2H-azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans-PdCl(2) complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically. International Union of Crystallography 2023-02-23 /pmc/articles/PMC9985946/ /pubmed/36871292 http://dx.doi.org/10.1107/S2053229623001468 Text en © Linden et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Linden, Anthony Bucher, Christoph B. Gubler, Ralf Villalgordo, José M. Heimgartner, Heinz Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title | Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title_full | Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title_fullStr | Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title_full_unstemmed | Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title_short | Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd complex of one of them |
title_sort | synthesis and crystal structures of new chiral 3-amino-2h-azirines and the pd complex of one of them |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985946/ https://www.ncbi.nlm.nih.gov/pubmed/36871292 http://dx.doi.org/10.1107/S2053229623001468 |
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