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Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them

3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures o...

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Autores principales: Linden, Anthony, Bucher, Christoph B., Gubler, Ralf, Villalgordo, José M., Heimgartner, Heinz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985946/
https://www.ncbi.nlm.nih.gov/pubmed/36871292
http://dx.doi.org/10.1107/S2053229623001468
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author Linden, Anthony
Bucher, Christoph B.
Gubler, Ralf
Villalgordo, José M.
Heimgartner, Heinz
author_facet Linden, Anthony
Bucher, Christoph B.
Gubler, Ralf
Villalgordo, José M.
Heimgartner, Heinz
author_sort Linden, Anthony
collection PubMed
description 3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2R)- and (2S)-2-ethyl-3-[(2S)-2-(1-meth­oxy-1,1-di­phenyl­meth­yl)pyrrolidin-1-yl]-2-methyl-2H-azirine, C(23)H(28)N(2)O, 11, and 2-benzyl-3-(N-methyl-N-phenyl­amino)-2-phenyl-2H-azirine, C(22)H(20)N(2), 12, and the third as its diastereoisomeric trans-PdCl(2) com­plex, trans-di­chlorido­[(2R)-2-ethyl-2-methyl-3-(X)-2H-azirine][(2S)-2-ethyl-2-methyl-3-(X)-2H-azirine]palladium(II), where X = N-{[(1S,2S,5S)-6,6-di­methylbi­cyclo­[3.1.1]heptan-2-yl]meth­yl}-N-phenyl­amino, [PdCl(2)(C(21)H(30)N(2))(2)], 14, have been determined and the geometries of the azirine rings com­pared with those of 11 other 3-amino-2H-azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each com­pound has crystallized in a chiral space group. The Pd atom in the trans-PdCl(2) com­plex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or com­posed of a pure enanti­omorph, but this could not be established specifically.
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spelling pubmed-99859462023-03-06 Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them Linden, Anthony Bucher, Christoph B. Gubler, Ralf Villalgordo, José M. Heimgartner, Heinz Acta Crystallogr C Struct Chem Research Papers 3-Amino-2H-azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2H-azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2R)- and (2S)-2-ethyl-3-[(2S)-2-(1-meth­oxy-1,1-di­phenyl­meth­yl)pyrrolidin-1-yl]-2-methyl-2H-azirine, C(23)H(28)N(2)O, 11, and 2-benzyl-3-(N-methyl-N-phenyl­amino)-2-phenyl-2H-azirine, C(22)H(20)N(2), 12, and the third as its diastereoisomeric trans-PdCl(2) com­plex, trans-di­chlorido­[(2R)-2-ethyl-2-methyl-3-(X)-2H-azirine][(2S)-2-ethyl-2-methyl-3-(X)-2H-azirine]palladium(II), where X = N-{[(1S,2S,5S)-6,6-di­methylbi­cyclo­[3.1.1]heptan-2-yl]meth­yl}-N-phenyl­amino, [PdCl(2)(C(21)H(30)N(2))(2)], 14, have been determined and the geometries of the azirine rings com­pared with those of 11 other 3-amino-2H-azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each com­pound has crystallized in a chiral space group. The Pd atom in the trans-PdCl(2) com­plex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or com­posed of a pure enanti­omorph, but this could not be established specifically. International Union of Crystallography 2023-02-23 /pmc/articles/PMC9985946/ /pubmed/36871292 http://dx.doi.org/10.1107/S2053229623001468 Text en © Linden et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Linden, Anthony
Bucher, Christoph B.
Gubler, Ralf
Villalgordo, José M.
Heimgartner, Heinz
Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title_full Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title_fullStr Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title_full_unstemmed Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title_short Synthesis and crystal structures of new chiral 3-amino-2H-azirines and the Pd com­plex of one of them
title_sort synthesis and crystal structures of new chiral 3-amino-2h-azirines and the pd com­plex of one of them
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9985946/
https://www.ncbi.nlm.nih.gov/pubmed/36871292
http://dx.doi.org/10.1107/S2053229623001468
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