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Errors in structural biology are not the exception
During the COVID-19 pandemic, the structural biology community swung into action quickly and efficiently, and many urgent questions were solved by macromolecular structure determination. The Coronavirus Structural Task Force evaluated all structures from SARS-CoV-1 and SARS-CoV-2, but errors in meas...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9986796/ https://www.ncbi.nlm.nih.gov/pubmed/36876430 http://dx.doi.org/10.1107/S2059798322011901 |
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author | Gao, Yunyun Thorn, Volker Thorn, Andrea |
author_facet | Gao, Yunyun Thorn, Volker Thorn, Andrea |
author_sort | Gao, Yunyun |
collection | PubMed |
description | During the COVID-19 pandemic, the structural biology community swung into action quickly and efficiently, and many urgent questions were solved by macromolecular structure determination. The Coronavirus Structural Task Force evaluated all structures from SARS-CoV-1 and SARS-CoV-2, but errors in measurement, data processing and modelling are present beyond these structures and throughout the structures deposited in the Protein Data Bank. Identifying them is only the first step; in order to minimize the impact that errors have in structural biology, error culture needs to change. It should be emphasized that the atomic model which is published is an interpretation of the measurement. Furthermore, risks should be minimized by addressing issues early and by investigating the source of a given problem, so that it may be avoided in the future. If we as a community can do this, it will greatly benefit experimental structural biologists as well as downstream users who are using structural models to deduce new biological and medical answers in the future. |
format | Online Article Text |
id | pubmed-9986796 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-99867962023-03-07 Errors in structural biology are not the exception Gao, Yunyun Thorn, Volker Thorn, Andrea Acta Crystallogr D Struct Biol Ccp4 During the COVID-19 pandemic, the structural biology community swung into action quickly and efficiently, and many urgent questions were solved by macromolecular structure determination. The Coronavirus Structural Task Force evaluated all structures from SARS-CoV-1 and SARS-CoV-2, but errors in measurement, data processing and modelling are present beyond these structures and throughout the structures deposited in the Protein Data Bank. Identifying them is only the first step; in order to minimize the impact that errors have in structural biology, error culture needs to change. It should be emphasized that the atomic model which is published is an interpretation of the measurement. Furthermore, risks should be minimized by addressing issues early and by investigating the source of a given problem, so that it may be avoided in the future. If we as a community can do this, it will greatly benefit experimental structural biologists as well as downstream users who are using structural models to deduce new biological and medical answers in the future. International Union of Crystallography 2023-02-27 /pmc/articles/PMC9986796/ /pubmed/36876430 http://dx.doi.org/10.1107/S2059798322011901 Text en © Gao, Thorn and Thorn 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Ccp4 Gao, Yunyun Thorn, Volker Thorn, Andrea Errors in structural biology are not the exception |
title | Errors in structural biology are not the exception |
title_full | Errors in structural biology are not the exception |
title_fullStr | Errors in structural biology are not the exception |
title_full_unstemmed | Errors in structural biology are not the exception |
title_short | Errors in structural biology are not the exception |
title_sort | errors in structural biology are not the exception |
topic | Ccp4 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9986796/ https://www.ncbi.nlm.nih.gov/pubmed/36876430 http://dx.doi.org/10.1107/S2059798322011901 |
work_keys_str_mv | AT gaoyunyun errorsinstructuralbiologyarenottheexception AT thornvolker errorsinstructuralbiologyarenottheexception AT thornandrea errorsinstructuralbiologyarenottheexception |