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Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa

OBJECTIVES: Delays in identification, resuscitation and referral have been identified as a preventable cause of avoidable severity of illness and mortality in South African children. To address this problem, a machine learning model to predict a compound outcome of death prior to discharge from hosp...

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Autores principales: Pienaar, Michael A., Sempa, Joseph B., Luwes, Nicolaas, George, Elizabeth C., Brown, Stephen C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9989015/
https://www.ncbi.nlm.nih.gov/pubmed/36896402
http://dx.doi.org/10.3389/fped.2023.1005579
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author Pienaar, Michael A.
Sempa, Joseph B.
Luwes, Nicolaas
George, Elizabeth C.
Brown, Stephen C.
author_facet Pienaar, Michael A.
Sempa, Joseph B.
Luwes, Nicolaas
George, Elizabeth C.
Brown, Stephen C.
author_sort Pienaar, Michael A.
collection PubMed
description OBJECTIVES: Delays in identification, resuscitation and referral have been identified as a preventable cause of avoidable severity of illness and mortality in South African children. To address this problem, a machine learning model to predict a compound outcome of death prior to discharge from hospital and/or admission to the PICU was developed. A key aspect of developing machine learning models is the integration of human knowledge in their development. The objective of this study is to describe how this domain knowledge was elicited, including the use of a documented literature search and Delphi procedure. DESIGN: A prospective mixed methodology development study was conducted that included qualitative aspects in the elicitation of domain knowledge, together with descriptive and analytical quantitative and machine learning methodologies. SETTING: A single centre tertiary hospital providing acute paediatric services. PARTICIPANTS: Three paediatric intensivists, six specialist paediatricians and three specialist anaesthesiologists. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The literature search identified 154 full-text articles reporting risk factors for mortality in hospitalised children. These factors were most commonly features of specific organ dysfunction. 89 of these publications studied children in lower- and middle-income countries. The Delphi procedure included 12 expert participants and was conducted over 3 rounds. Respondents identified a need to achieve a compromise between model performance, comprehensiveness and veracity and practicality of use. Participants achieved consensus on a range of clinical features associated with severe illness in children. No special investigations were considered for inclusion in the model except point-of-care capillary blood glucose testing. The results were integrated by the researcher and a final list of features was compiled. CONCLUSION: The elicitation of domain knowledge is important in effective machine learning applications. The documentation of this process enhances rigour in such models and should be reported in publications. A documented literature search, Delphi procedure and the integration of the domain knowledge of the researchers contributed to problem specification and selection of features prior to feature engineering, pre-processing and model development.
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spelling pubmed-99890152023-03-08 Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa Pienaar, Michael A. Sempa, Joseph B. Luwes, Nicolaas George, Elizabeth C. Brown, Stephen C. Front Pediatr Pediatrics OBJECTIVES: Delays in identification, resuscitation and referral have been identified as a preventable cause of avoidable severity of illness and mortality in South African children. To address this problem, a machine learning model to predict a compound outcome of death prior to discharge from hospital and/or admission to the PICU was developed. A key aspect of developing machine learning models is the integration of human knowledge in their development. The objective of this study is to describe how this domain knowledge was elicited, including the use of a documented literature search and Delphi procedure. DESIGN: A prospective mixed methodology development study was conducted that included qualitative aspects in the elicitation of domain knowledge, together with descriptive and analytical quantitative and machine learning methodologies. SETTING: A single centre tertiary hospital providing acute paediatric services. PARTICIPANTS: Three paediatric intensivists, six specialist paediatricians and three specialist anaesthesiologists. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: The literature search identified 154 full-text articles reporting risk factors for mortality in hospitalised children. These factors were most commonly features of specific organ dysfunction. 89 of these publications studied children in lower- and middle-income countries. The Delphi procedure included 12 expert participants and was conducted over 3 rounds. Respondents identified a need to achieve a compromise between model performance, comprehensiveness and veracity and practicality of use. Participants achieved consensus on a range of clinical features associated with severe illness in children. No special investigations were considered for inclusion in the model except point-of-care capillary blood glucose testing. The results were integrated by the researcher and a final list of features was compiled. CONCLUSION: The elicitation of domain knowledge is important in effective machine learning applications. The documentation of this process enhances rigour in such models and should be reported in publications. A documented literature search, Delphi procedure and the integration of the domain knowledge of the researchers contributed to problem specification and selection of features prior to feature engineering, pre-processing and model development. Frontiers Media S.A. 2023-02-21 /pmc/articles/PMC9989015/ /pubmed/36896402 http://dx.doi.org/10.3389/fped.2023.1005579 Text en © 2023 Pienaar, Sempa, Luwes, George and Brown. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pediatrics
Pienaar, Michael A.
Sempa, Joseph B.
Luwes, Nicolaas
George, Elizabeth C.
Brown, Stephen C.
Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title_full Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title_fullStr Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title_full_unstemmed Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title_short Elicitation of domain knowledge for a machine learning model for paediatric critical illness in South Africa
title_sort elicitation of domain knowledge for a machine learning model for paediatric critical illness in south africa
topic Pediatrics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9989015/
https://www.ncbi.nlm.nih.gov/pubmed/36896402
http://dx.doi.org/10.3389/fped.2023.1005579
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