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Demonstrating quality control procedures for fMRI in DPABI
Quality control (QC) is an important stage for functional magnetic resonance imaging (fMRI) studies. The methods for fMRI QC vary in different fMRI preprocessing pipelines. The inflating sample size and number of scanning sites for fMRI studies further add to the difficulty and working load of the Q...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9989208/ https://www.ncbi.nlm.nih.gov/pubmed/36895416 http://dx.doi.org/10.3389/fnins.2023.1069639 |
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author | Lu, Bin Yan, Chao-Gan |
author_facet | Lu, Bin Yan, Chao-Gan |
author_sort | Lu, Bin |
collection | PubMed |
description | Quality control (QC) is an important stage for functional magnetic resonance imaging (fMRI) studies. The methods for fMRI QC vary in different fMRI preprocessing pipelines. The inflating sample size and number of scanning sites for fMRI studies further add to the difficulty and working load of the QC procedure. Therefore, as a constituent part of the Demonstrating Quality Control Procedures in fMRI research topic in Frontiers, we preprocessed a well-organized open-available dataset using DPABI pipelines to illustrate the QC procedure in DPABI. Six categories of DPABI-derived reports were used to eliminate images without adequate quality. After the QC procedure, twelve participants (8.6%) were categorized as excluded and eight participants (5.8%) were categorized as uncertain. More automatic QC tools were needed in the big-data era while visually inspecting images was still indispensable now. |
format | Online Article Text |
id | pubmed-9989208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99892082023-03-08 Demonstrating quality control procedures for fMRI in DPABI Lu, Bin Yan, Chao-Gan Front Neurosci Neuroscience Quality control (QC) is an important stage for functional magnetic resonance imaging (fMRI) studies. The methods for fMRI QC vary in different fMRI preprocessing pipelines. The inflating sample size and number of scanning sites for fMRI studies further add to the difficulty and working load of the QC procedure. Therefore, as a constituent part of the Demonstrating Quality Control Procedures in fMRI research topic in Frontiers, we preprocessed a well-organized open-available dataset using DPABI pipelines to illustrate the QC procedure in DPABI. Six categories of DPABI-derived reports were used to eliminate images without adequate quality. After the QC procedure, twelve participants (8.6%) were categorized as excluded and eight participants (5.8%) were categorized as uncertain. More automatic QC tools were needed in the big-data era while visually inspecting images was still indispensable now. Frontiers Media S.A. 2023-02-21 /pmc/articles/PMC9989208/ /pubmed/36895416 http://dx.doi.org/10.3389/fnins.2023.1069639 Text en Copyright © 2023 Lu and Yan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Lu, Bin Yan, Chao-Gan Demonstrating quality control procedures for fMRI in DPABI |
title | Demonstrating quality control procedures for fMRI in DPABI |
title_full | Demonstrating quality control procedures for fMRI in DPABI |
title_fullStr | Demonstrating quality control procedures for fMRI in DPABI |
title_full_unstemmed | Demonstrating quality control procedures for fMRI in DPABI |
title_short | Demonstrating quality control procedures for fMRI in DPABI |
title_sort | demonstrating quality control procedures for fmri in dpabi |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9989208/ https://www.ncbi.nlm.nih.gov/pubmed/36895416 http://dx.doi.org/10.3389/fnins.2023.1069639 |
work_keys_str_mv | AT lubin demonstratingqualitycontrolproceduresforfmriindpabi AT yanchaogan demonstratingqualitycontrolproceduresforfmriindpabi |