Cargando…

scEvoNet: a gradient boosting-based method for prediction of cell state evolution

BACKGROUND: Exploring the function or the developmental history of cells in various organisms provides insights into a given cell type's core molecular characteristics and putative evolutionary mechanisms. Numerous computational methods now exist for analyzing single-cell data and identifying c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kotov, Aleksandr, Zinovyev, Andrei, Monsoro-Burq, Anne-Helene
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9990205/ https://www.ncbi.nlm.nih.gov/pubmed/36879200 http://dx.doi.org/10.1186/s12859-023-05213-3

Ejemplares similares

EvoRSR: an integrated system for exploring evolution of RNA structural robustness
por: Shu, Wenjie, et al.
Publicado: (2009)

EvoLaps: a web interface to visualize continuous phylogeographic reconstructions
por: Chevenet, François, et al.
Publicado: (2021)

EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data
por: Gatenbee, Chandler D., et al.
Publicado: (2019)

lncEvo: automated identification and conservation study of long noncoding RNAs
por: Bryzghalov, Oleksii, et al.
Publicado: (2021)

DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts
por: Czerwinska, Urszula, et al.
Publicado: (2015)

scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing
por: Li, Kejie, et al.
Publicado: (2023)

CastNet: a systems-level sequence evolution simulator
por: Rivera-Rivera, Carlos J., et al.
Publicado: (2023)

scNetViz: from single cells to networks using Cytoscape
por: Choudhary, Krishna, et al.
Publicado: (2021)

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats
por: Bonnet, Eric, et al.
Publicado: (2013)

NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps
por: Kuperstein, Inna, et al.
Publicado: (2013)

The vertebrate-specific VENTX/NANOG gene empowers neural crest with ectomesenchyme potential
por: Scerbo, Pierluigi, et al.
Publicado: (2020)

Insights Into the Early Gene Regulatory Network Controlling Neural Crest and Placode Fate Choices at the Neural Border
por: Seal, Subham, et al.
Publicado: (2020)

Applications of evolutionary computing: EvoWorkshops 2007:EvoCOMNET, EvoFIN, EvoIASP, EvoINTERACTION, EvoMUSART, EvoSTOC, and EvoTransLog, Valencia, Spain, April 11-13, 2007, proceedings
por: Giacobini, Mario, et al.
Publicado: (2007)

scSTEM: clustering pseudotime ordered single-cell data
por: Song, Qi, et al.
Publicado: (2022)

Neural crest multipotency and specification: power and limits of single cell transcriptomic approaches
por: Artinger, Kristin B, et al.
Publicado: (2021)

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics
por: Barker, Michael S., et al.
Publicado: (2010)

scDIOR: single cell RNA-seq data IO software
por: Feng, Huijian, et al.
Publicado: (2022)

Meta-DiSc: a software for meta-analysis of test accuracy data
por: Zamora, Javier, et al.
Publicado: (2006)

SC3s: efficient scaling of single cell consensus clustering to millions of cells
por: Quah, Fu Xiang, et al.
Publicado: (2022)

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
por: Candia, Julián, et al.
Publicado: (2019)

Characterization of phylogenetic networks with NetTest
por: Arenas, Miguel, et al.
Publicado: (2010)

anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data
por: Zamboni, Nicola, et al.
Publicado: (2008)

scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data
por: Yu, Wenbao, et al.
Publicado: (2020)

PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships
por: Huerta, Mario, et al.
Publicado: (2009)

Evolutionary Connectionism: Algorithmic Principles Underlying the Evolution of Biological Organisation in Evo-Devo, Evo-Eco and Evolutionary Transitions
por: Watson, Richard A., et al.
Publicado: (2015)

scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
por: Choi, Ji-Hye, et al.
Publicado: (2020)

scHaplotyper: haplotype construction and visualization for genetic diagnosis using single cell DNA sequencing data
por: Yan, Zhiqiang, et al.
Publicado: (2020)

scAnnotatR: framework to accurately classify cell types in single-cell RNA-sequencing data
por: Nguyen, Vy, et al.
Publicado: (2022)

PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity
por: Montemurro, Marilisa, et al.
Publicado: (2021)

scQCEA: a framework for annotation and quality control report of single-cell RNA-sequencing data
por: Nassiri, Isar, et al.
Publicado: (2023)

scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis
por: Nale, Valentina, et al.
Publicado: (2023)

NetGrep: fast network schema searches in interactomes
por: Banks, Eric, et al.
Publicado: (2008)

SpectralNET – an application for spectral graph analysis and visualization
por: Forman, Joshua J, et al.
Publicado: (2005)

GatewayNet: a form of sequential rule mining
por: Kilgore, Phillip C. S. R., et al.
Publicado: (2019)

Meta-DiSc 2.0: a web application for meta-analysis of diagnostic test accuracy data
por: Plana, Maria N., et al.
Publicado: (2022)

Scellpam: an R package/C++ library to perform parallel partitioning around medoids on scRNAseq data sets
por: Domingo, Juan, et al.
Publicado: (2023)

Evo-SETI: life evolution statistics on Earth and exoplanets
por: Maccone, Claudio
Publicado: (2020)

BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets
por: Zagganas, Konstantinos, et al.
Publicado: (2017)

2nd EvoNet Summer School on Theoretical Aspects of Evolutionary Computing
Publicado: (1999)

Linking Cytoscape and the corynebacterial reference database CoryneRegNet
por: Baumbach, Jan, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_41lv8dpljk8s7r23qqfchtot0g