Recent advances in the plant epitranscriptome

Chemical modifications of RNAs, known as the epitranscriptome, are emerging as widespread regulatory mechanisms underlying gene regulation. The field of epitranscriptomics advances recently due to improved transcriptome-wide sequencing strategies for mapping RNA modifications and intensive characterization of writers, erasers, and readers that deposit, remove, and recognize RNA modifications, respectively. Herein, we review recent advances in characterizing plant epitranscriptome and its regulatory mechanisms in post-transcriptional gene regulation and diverse physiological processes, with main emphasis on N(6)-methyladenosine (m(6)A) and 5-methylcytosine (m(5)C). We also discuss the potential and challenges for utilization of epitranscriptome editing in crop improvement. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-023-02872-6.