Cargando…

External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966

This is a retrospective observational study to externally validate a deep learning image classification model. OBJECTIVE. Deep learning models such as SpineNet offer the possibility of automating the process of disk degeneration (DD) classification from magnetic resonance imaging (MRI). External val...

Descripción completa

Detalles Bibliográficos
Autores principales: McSweeney, Terence P., Tiulpin, Aleksei, Saarakkala, Simo, Niinimäki, Jaakko, Windsor, Rhydian, Jamaludin, Amir, Kadir, Timor, Karppinen, Jaro, Määttä, Juhani
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9990601/
https://www.ncbi.nlm.nih.gov/pubmed/36728678
http://dx.doi.org/10.1097/BRS.0000000000004572
_version_ 1784901969209458688
author McSweeney, Terence P.
Tiulpin, Aleksei
Saarakkala, Simo
Niinimäki, Jaakko
Windsor, Rhydian
Jamaludin, Amir
Kadir, Timor
Karppinen, Jaro
Määttä, Juhani
author_facet McSweeney, Terence P.
Tiulpin, Aleksei
Saarakkala, Simo
Niinimäki, Jaakko
Windsor, Rhydian
Jamaludin, Amir
Kadir, Timor
Karppinen, Jaro
Määttä, Juhani
author_sort McSweeney, Terence P.
collection PubMed
description This is a retrospective observational study to externally validate a deep learning image classification model. OBJECTIVE. Deep learning models such as SpineNet offer the possibility of automating the process of disk degeneration (DD) classification from magnetic resonance imaging (MRI). External validation is an essential step to their development. The aim of this study was to externally validate SpineNet predictions for DD using Pfirrmann classification and Modic changes (MCs) on data from the Northern Finland Birth Cohort 1966 (NFBC1966). SUMMARY OF DATA. We validated SpineNet using data from 1331 NFBC1966 participants for whom both lumbar spine MRI data and consensus DD gradings were available. MATERIALS AND METHODS. SpineNet returned Pfirrmann grade and MC presence from T2-weighted sagittal lumbar MRI sequences from NFBC1966, a data set geographically and temporally separated from its training data set. A range of agreement and reliability metrics were used to compare predictions with expert radiologists. Subsets of data that match SpineNet training data more closely were also tested. RESULTS. Balanced accuracy for DD was 78% (77%–79%) and for MC 86% (85%–86%). Interrater reliability for Pfirrmann grading was Lin concordance correlation coefficient=0.86 (0.85–0.87) and Cohen κ=0.68 (0.67–0.69). In a low back pain subset, these reliability metrics remained largely unchanged. In total, 20.83% of disks were rated differently by SpineNet compared with the human raters, but only 0.85% of disks had a grade difference >1. Interrater reliability for MC detection was κ=0.74 (0.72–0.75). In the low back pain subset, this metric was almost unchanged at κ=0.76 (0.73–0.79). CONCLUSIONS. In this study, SpineNet has been benchmarked against expert human raters in the research setting. It has matched human reliability and demonstrates robust performance despite the multiple challenges facing model generalizability.
format Online
Article
Text
id pubmed-9990601
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Lippincott Williams & Wilkins
record_format MEDLINE/PubMed
spelling pubmed-99906012023-03-08 External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966 McSweeney, Terence P. Tiulpin, Aleksei Saarakkala, Simo Niinimäki, Jaakko Windsor, Rhydian Jamaludin, Amir Kadir, Timor Karppinen, Jaro Määttä, Juhani Spine (Phila Pa 1976) Epidemiology This is a retrospective observational study to externally validate a deep learning image classification model. OBJECTIVE. Deep learning models such as SpineNet offer the possibility of automating the process of disk degeneration (DD) classification from magnetic resonance imaging (MRI). External validation is an essential step to their development. The aim of this study was to externally validate SpineNet predictions for DD using Pfirrmann classification and Modic changes (MCs) on data from the Northern Finland Birth Cohort 1966 (NFBC1966). SUMMARY OF DATA. We validated SpineNet using data from 1331 NFBC1966 participants for whom both lumbar spine MRI data and consensus DD gradings were available. MATERIALS AND METHODS. SpineNet returned Pfirrmann grade and MC presence from T2-weighted sagittal lumbar MRI sequences from NFBC1966, a data set geographically and temporally separated from its training data set. A range of agreement and reliability metrics were used to compare predictions with expert radiologists. Subsets of data that match SpineNet training data more closely were also tested. RESULTS. Balanced accuracy for DD was 78% (77%–79%) and for MC 86% (85%–86%). Interrater reliability for Pfirrmann grading was Lin concordance correlation coefficient=0.86 (0.85–0.87) and Cohen κ=0.68 (0.67–0.69). In a low back pain subset, these reliability metrics remained largely unchanged. In total, 20.83% of disks were rated differently by SpineNet compared with the human raters, but only 0.85% of disks had a grade difference >1. Interrater reliability for MC detection was κ=0.74 (0.72–0.75). In the low back pain subset, this metric was almost unchanged at κ=0.76 (0.73–0.79). CONCLUSIONS. In this study, SpineNet has been benchmarked against expert human raters in the research setting. It has matched human reliability and demonstrates robust performance despite the multiple challenges facing model generalizability. Lippincott Williams & Wilkins 2023-04-01 2022-12-30 /pmc/articles/PMC9990601/ /pubmed/36728678 http://dx.doi.org/10.1097/BRS.0000000000004572 Text en © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (https://creativecommons.org/licenses/by/4.0/) (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/)
spellingShingle Epidemiology
McSweeney, Terence P.
Tiulpin, Aleksei
Saarakkala, Simo
Niinimäki, Jaakko
Windsor, Rhydian
Jamaludin, Amir
Kadir, Timor
Karppinen, Jaro
Määttä, Juhani
External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title_full External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title_fullStr External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title_full_unstemmed External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title_short External Validation of SpineNet, an Open-Source Deep Learning Model for Grading Lumbar Disk Degeneration MRI Features, Using the Northern Finland Birth Cohort 1966
title_sort external validation of spinenet, an open-source deep learning model for grading lumbar disk degeneration mri features, using the northern finland birth cohort 1966
topic Epidemiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9990601/
https://www.ncbi.nlm.nih.gov/pubmed/36728678
http://dx.doi.org/10.1097/BRS.0000000000004572
work_keys_str_mv AT mcsweeneyterencep externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT tiulpinaleksei externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT saarakkalasimo externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT niinimakijaakko externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT windsorrhydian externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT jamaludinamir externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT kadirtimor externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT karppinenjaro externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966
AT maattajuhani externalvalidationofspinenetanopensourcedeeplearningmodelforgradinglumbardiskdegenerationmrifeaturesusingthenorthernfinlandbirthcohort1966