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Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma

BACKGROUND: Ferroptosis is an iron-dependent regulated cell death pathway that plays an essential role in the occurrence and development of tumours. Nonetheless, little is known about the impact of ferroptosis-related genes (FRGs) on neuroblastoma. METHODS: Transcriptional profiles and clinicopathol...

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Detalles Bibliográficos
Autores principales: Wang, Xin, Yang, Jun, Bian, Hongqiang, Yang, Hu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9992189/
https://www.ncbi.nlm.nih.gov/pubmed/36911020
http://dx.doi.org/10.3389/fped.2023.1067187
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author Wang, Xin
Yang, Jun
Bian, Hongqiang
Yang, Hu
author_facet Wang, Xin
Yang, Jun
Bian, Hongqiang
Yang, Hu
author_sort Wang, Xin
collection PubMed
description BACKGROUND: Ferroptosis is an iron-dependent regulated cell death pathway that plays an essential role in the occurrence and development of tumours. Nonetheless, little is known about the impact of ferroptosis-related genes (FRGs) on neuroblastoma. METHODS: Transcriptional profiles and clinicopathological data of neuroblastoma were downloaded from the TARGET and GEO datasets. These were used as the training set and the validation set, respectively. Non-negative matrix factorisation was employed to divide patients with neuroblastoma into distinct ferroptosis clusters. The Cox regression model with LASSO was performed based on the FRGs to construct a multigene signature, which was subsequently evaluated in the testing set. Finally, we analysed the differences in the tumour immune microenvironment (TIME) and immunotherapeutic response among the different risk groups. RESULTS: The two distinct ferroptosis subtypes were determined and correlated with different clinical outcomes and tumour-infiltrating immune cells (TIICs). A risk model was developed to explore the risk scores of the individual patients. Patients in the low-risk group survived significantly longer than those in the high-risk group and showed a good predictive performance in the testing set. The risk score was significantly linked to clinicopathological traits, and it was confirmed as an independent prognostic indicator for assessing the overall survival. We also found that patients with low-risk scores had a higher infiltration of TIICs and a better immunotherapeutic response. CONCLUSIONS: This study showed the potential role of FRGs in contributing to the clinical features, prognosis, TIME, and immunotherapy of neuroblastoma cases. Our findings offer a valuable basis for future research in targeting ferroptosis and its TIME and provide novel measures for the prevention and treatment of neuroblastoma.
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spelling pubmed-99921892023-03-09 Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma Wang, Xin Yang, Jun Bian, Hongqiang Yang, Hu Front Pediatr Pediatrics BACKGROUND: Ferroptosis is an iron-dependent regulated cell death pathway that plays an essential role in the occurrence and development of tumours. Nonetheless, little is known about the impact of ferroptosis-related genes (FRGs) on neuroblastoma. METHODS: Transcriptional profiles and clinicopathological data of neuroblastoma were downloaded from the TARGET and GEO datasets. These were used as the training set and the validation set, respectively. Non-negative matrix factorisation was employed to divide patients with neuroblastoma into distinct ferroptosis clusters. The Cox regression model with LASSO was performed based on the FRGs to construct a multigene signature, which was subsequently evaluated in the testing set. Finally, we analysed the differences in the tumour immune microenvironment (TIME) and immunotherapeutic response among the different risk groups. RESULTS: The two distinct ferroptosis subtypes were determined and correlated with different clinical outcomes and tumour-infiltrating immune cells (TIICs). A risk model was developed to explore the risk scores of the individual patients. Patients in the low-risk group survived significantly longer than those in the high-risk group and showed a good predictive performance in the testing set. The risk score was significantly linked to clinicopathological traits, and it was confirmed as an independent prognostic indicator for assessing the overall survival. We also found that patients with low-risk scores had a higher infiltration of TIICs and a better immunotherapeutic response. CONCLUSIONS: This study showed the potential role of FRGs in contributing to the clinical features, prognosis, TIME, and immunotherapy of neuroblastoma cases. Our findings offer a valuable basis for future research in targeting ferroptosis and its TIME and provide novel measures for the prevention and treatment of neuroblastoma. Frontiers Media S.A. 2023-02-22 /pmc/articles/PMC9992189/ /pubmed/36911020 http://dx.doi.org/10.3389/fped.2023.1067187 Text en © 2023 Wang, Yang, Bian and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pediatrics
Wang, Xin
Yang, Jun
Bian, Hongqiang
Yang, Hu
Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title_full Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title_fullStr Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title_full_unstemmed Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title_short Development of A novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
title_sort development of a novel ferroptosis-related prognostic signature with multiple significance in paediatric neuroblastoma
topic Pediatrics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9992189/
https://www.ncbi.nlm.nih.gov/pubmed/36911020
http://dx.doi.org/10.3389/fped.2023.1067187
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