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Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria

Due to their numerous well-established applications in the food industry, there have been many studies regarding the adaptation and evolution of lactic acid bacteria (LAB) in a wide variety of hosts and environments. Progress in sequencing technology and continual decreases in its costs have led to...

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Autores principales: Mendoza, Remilyn M., Kim, Sang Hoon, Vasquez, Robie, Hwang, In-Chan, Park, Young-Seo, Paik, Hyun-Dong, Moon, Gi-Seong, Kang, Dae-Kyung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Nature Singapore 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9992694/
https://www.ncbi.nlm.nih.gov/pubmed/36911331
http://dx.doi.org/10.1007/s10068-022-01142-8
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author Mendoza, Remilyn M.
Kim, Sang Hoon
Vasquez, Robie
Hwang, In-Chan
Park, Young-Seo
Paik, Hyun-Dong
Moon, Gi-Seong
Kang, Dae-Kyung
author_facet Mendoza, Remilyn M.
Kim, Sang Hoon
Vasquez, Robie
Hwang, In-Chan
Park, Young-Seo
Paik, Hyun-Dong
Moon, Gi-Seong
Kang, Dae-Kyung
author_sort Mendoza, Remilyn M.
collection PubMed
description Due to their numerous well-established applications in the food industry, there have been many studies regarding the adaptation and evolution of lactic acid bacteria (LAB) in a wide variety of hosts and environments. Progress in sequencing technology and continual decreases in its costs have led to the availability of LAB genome sequence data. Bioinformatics has been central to the extraction of valuable information from these raw genome sequence data. This paper presents the roles of bioinformatics tools and databases in understanding the adaptation and evolution of LAB, as well as the bioinformatics methods used in the initial screening of LAB for probiotic potential. Moreover, the advantages, challenges, and limitations of employing bioinformatics for these purposes are discussed.
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spelling pubmed-99926942023-08-10 Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria Mendoza, Remilyn M. Kim, Sang Hoon Vasquez, Robie Hwang, In-Chan Park, Young-Seo Paik, Hyun-Dong Moon, Gi-Seong Kang, Dae-Kyung Food Sci Biotechnol Invited Review Due to their numerous well-established applications in the food industry, there have been many studies regarding the adaptation and evolution of lactic acid bacteria (LAB) in a wide variety of hosts and environments. Progress in sequencing technology and continual decreases in its costs have led to the availability of LAB genome sequence data. Bioinformatics has been central to the extraction of valuable information from these raw genome sequence data. This paper presents the roles of bioinformatics tools and databases in understanding the adaptation and evolution of LAB, as well as the bioinformatics methods used in the initial screening of LAB for probiotic potential. Moreover, the advantages, challenges, and limitations of employing bioinformatics for these purposes are discussed. Springer Nature Singapore 2022-08-10 /pmc/articles/PMC9992694/ /pubmed/36911331 http://dx.doi.org/10.1007/s10068-022-01142-8 Text en © The Korean Society of Food Science and Technology 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. https://smart.servier.com/category/cellular-biology/nucleic-acids/This work was supported by the Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, and Forestry (IPET) through the High Value-added Food Technology Development Program, funded by the Ministry of Agriculture, Food and Rural Affairs (MAFRA) (grant no. 321035052HD040). It was also supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (No. 2020R1A2C1010406). Figure 1 was partly generated using Servier Medical Art, provided by Servier, licensed under a Creative Commons Attribution 3.0 unported license accessed at https://smart.servier.com/category/cellular-biology/nucleic-acids/ and Vecteezy accessed at https://www.vecteezy.com/
spellingShingle Invited Review
Mendoza, Remilyn M.
Kim, Sang Hoon
Vasquez, Robie
Hwang, In-Chan
Park, Young-Seo
Paik, Hyun-Dong
Moon, Gi-Seong
Kang, Dae-Kyung
Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title_full Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title_fullStr Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title_full_unstemmed Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title_short Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
title_sort bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
topic Invited Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9992694/
https://www.ncbi.nlm.nih.gov/pubmed/36911331
http://dx.doi.org/10.1007/s10068-022-01142-8
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