Cargando…

Molecular Surveillance of Malaria Using the PF AmpliSeq Custom Assay for Plasmodium falciparum Parasites from Dried Blood Spot DNA Isolates from Peru

Malaria molecular surveillance has great potential to support national malaria control programs (NMCPs), informing policy for its control and elimination. Here, we present a new three-day workflow for targeted resequencing of markers in 13 resistance-associated genes, histidine rich protein 2 and 3...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kattenberg, Johanna Helena, Van Dijk, Norbert J., Fernández-Miñope, Carlos A., Guetens, Pieter, Mutsaers, Mathijs, Gamboa, Dionicia, Rosanas-Urgell, Anna
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Bio-Protocol 2023
Materias:	Methods Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9993081/ https://www.ncbi.nlm.nih.gov/pubmed/36908639 http://dx.doi.org/10.21769/BioProtoc.4621

Ejemplares similares

Malaria Molecular Surveillance in the Peruvian Amazon with a Novel Highly Multiplexed Plasmodium falciparum AmpliSeq Assay
por: Kattenberg, Johanna Helena, et al.
Publicado: (2023)

Novel highly-multiplexed AmpliSeq targeted assay for Plasmodium vivax genetic surveillance use cases at multiple geographical scales
por: Kattenberg, Johanna Helena, et al.
Publicado: (2022)

Simple and efficient germline copy number variant visualization method for the Ion AmpliSeq™ custom panel
por: Nishio, Shin‐ya, et al.
Publicado: (2018)

Evaluation of the Performance of AmpliSeq and SureSelect Exome Sequencing Libraries for Ion Proton
por: Gampawar, Piyush, et al.
Publicado: (2019)

Identification of Novel Mutations in Colorectal Cancer Patients Using AmpliSeq Comprehensive Cancer Panel
por: Almuzzaini, Bader, et al.
Publicado: (2021)

Next-generation sequencing of human opioid receptor genes based on a custom AmpliSeq™ library and ion torrent personal genome machine
por: Kringel, Dario, et al.
Publicado: (2016)

Evaluation of the Ion AmpliSeq SARS-CoV-2 Research Panel by Massive Parallel Sequencing
por: Alessandrini, Federica, et al.
Publicado: (2020)

Computational Functional Genomics-Based AmpliSeq™ Panel for Next-Generation Sequencing of Key Genes of Pain
por: Kringel, Dario, et al.
Publicado: (2021)

Two Novel Mutations Associated With Ataxia-Telangiectasia Identified Using an Ion AmpliSeq Inherited Disease Panel
por: Kuznetsova, Maria V., et al.
Publicado: (2017)

Development of an AmpliSeq(TM) Panel for Next-Generation Sequencing of a Set of Genetic Predictors of Persisting Pain
por: Kringel, Dario, et al.
Publicado: (2018)

SARS-CoV-2 Genome Sequence from Morocco, Obtained Using Ion AmpliSeq Technology
por: Jouali, Farah, et al.
Publicado: (2020)

AmpliSeq transcriptome analysis of human alveolar and monocyte-derived macrophages over time in response to Mycobacterium tuberculosis infection
por: Papp, Audrey C., et al.
Publicado: (2018)

Highly multiplexed AmpliSeq technology identifies novel variation of flowering time-related genes in soybean (Glycine max)
por: Ogiso-Tanaka, Eri, et al.
Publicado: (2019)

AmpliSeq Transcriptome of Laser Captured Neurons from Alzheimer Brain: Comparison of Single Cell Versus Neuron Pools
por: Deng, Wenjun, et al.
Publicado: (2019)

Application of a High-Throughput Targeted Sequence AmpliSeq Procedure to Assess the Presence and Variants of Virulence Genes in Salmonella
por: Gao, Ruimin, et al.
Publicado: (2022)

Molecular profiling of gene fusions in soft tissue sarcomas by Ion AmpliSeq(TM): a study of 35 cases
por: Wei, Rong, et al.
Publicado: (2022)

SNP analysis of challenging bone DNA samples using the HID-Ion AmpliSeq™ Identity Panel: facts and artefacts
por: Fattorini, Paolo, et al.
Publicado: (2023)

Evaluation of the Ion AmpliSeq™ PhenoTrivium Panel: MPS-Based Assay for Ancestry and Phenotype Predictions Challenged by Casework Samples
por: Diepenbroek, Marta, et al.
Publicado: (2020)

Next-generation sequencing of the human TRPV1 gene and the regulating co-players LTB4R and LTB4R2 based on a custom AmpliSeq(™) panel
por: Kringel, Dario, et al.
Publicado: (2017)

Multicopy targets for Plasmodium vivax and Plasmodium falciparum detection by colorimetric LAMP
por: Nolasco, Oscar, et al.
Publicado: (2021)

Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis
por: Li, Wenli, et al.
Publicado: (2015)

Determining Genotypic Drug Resistance by Ion Semiconductor Sequencing With the Ion AmpliSeq™ TB Panel in Multidrug-Resistant Mycobacterium tuberculosis Isolates
por: Park, Joonhong, et al.
Publicado: (2018)

Whole-Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina MiSeq ARTIC Protocol
por: Plitnick, Jonathan, et al.
Publicado: (2021)

Validation of AmpliSeq NGS Panel for BRCA1 and BRCA2 Variant Detection in Canine Formalin-Fixed Paraffin-Embedded Mammary Tumors
por: Di Giacomo, Daniela, et al.
Publicado: (2022)

Detection of genetic mutations in patients with breast cancer from Saudi Arabia using Ion AmpliSeq™ Cancer Hotspot Panel v.2.0
por: Messaoudi, Safia A., et al.
Publicado: (2022)

Molecular surveillance of Plasmodium falciparum drug-resistance markers in Vietnam using multiplex amplicon sequencing (2000–2016)
por: Rovira-Vallbona, Eduard, et al.
Publicado: (2023)

Author Correction: Molecular surveillance of Plasmodium falciparum drug-resistance markers in Vietnam using multiplex amplicon sequencing (2000–2016)
por: Rovira-Vallbona, Eduard, et al.
Publicado: (2023)

AmpliSeq Screening of Genes Encoding the C-Type Lectin Receptors and Their Signaling Components Reveals a Common Variant in MASP1 Associated with Pulmonary Tuberculosis in an Indian Population
por: Klassert, Tilman E., et al.
Publicado: (2018)

Longitudinal tracking and quantification of individual Plasmodium falciparum clones in complex infections
por: Lerch, Anita, et al.
Publicado: (2019)

A new Plasmodium vivax reference genome for South American isolates
por: De Meulenaere, Katlijn, et al.
Publicado: (2023)

Band 3–mediated Plasmodium vivax invasion is associated with transcriptional variation in PvTRAg genes
por: De Meulenaere, Katlijn, et al.
Publicado: (2022)

Modelling the potential of focal screening and treatment as elimination strategy for Plasmodium falciparum malaria in the Peruvian Amazon Region
por: Rosas-Aguirre, Angel, et al.
Publicado: (2015)

The history of 20(th) century malaria control in Peru
por: Griffing, Sean M, et al.
Publicado: (2013)

Anti-Plasmodium falciparum invasion ligand antibodies in a low malaria transmission region, Loreto, Peru
por: Villasis, Elizabeth, et al.
Publicado: (2012)

High prevalence of very-low Plasmodium falciparum and Plasmodium vivax parasitaemia carriers in the Peruvian Amazon: insights into local and occupational mobility-related transmission
por: Carrasco-Escobar, Gabriel, et al.
Publicado: (2017)

Microscopic and submicroscopic Plasmodium falciparum infection, maternal anaemia and adverse pregnancy outcomes in Papua New Guinea: a cohort study
por: Unger, Holger W., et al.
Publicado: (2019)

Molecular Epidemiology of Plasmodium falciparum Malaria Outbreak, Tumbes, Peru, 2010–2012
por: Baldeviano, G. Christian, et al.
Publicado: (2015)

Relative contribution of low-density and asymptomatic infections to Plasmodium vivax transmission in the Amazon: pooled analysis of individual participant data from population-based cross-sectional surveys
por: Ferreira, Marcelo U., et al.
Publicado: (2022)

Quantification of malaria antigens PfHRP2 and pLDH by quantitative suspension array technology in whole blood, dried blood spot and plasma
por: Martiáñez-Vendrell, Xavier, et al.
Publicado: (2020)

Reporter lines based on the gexp02 promoter enable early quantification of sexual conversion rates in the malaria parasite Plasmodium falciparum
por: Portugaliza, Harvie P., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_r39c81qo7bfqajgkpms849j490