Cargando…

TaME-seq2: tagmentation-assisted multiplex PCR enrichment sequencing for viral genomic profiling

BACKGROUND: Previously developed TaME-seq method for deep sequencing of HPV, allowed simultaneous identification of the human papillomavirus (HPV) DNA consensus sequence, low-frequency variable sites, and chromosomal integration events. The method has been successfully validated and applied to the s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hesselberg Løvestad, Alexander, Stosic, Milan S., Costanzi, Jean-Marc, Christiansen, Irene Kraus, Aamot, Hege Vangstein, Ambur, Ole Herman, Rounge, Trine B.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9993372/ https://www.ncbi.nlm.nih.gov/pubmed/36890572 http://dx.doi.org/10.1186/s12985-023-02002-5

Ejemplares similares

TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration
por: Lagström, Sonja, et al.
Publicado: (2019)

Differences in integration frequencies and APOBEC3 profiles of five high-risk HPV types adheres to phylogeny
por: Løvestad, Alexander Hesselberg, et al.
Publicado: (2022)

HPV16 and HPV18 type-specific APOBEC3 and integration profiles in different diagnostic categories of cervical samples
por: Lagström, Sonja, et al.
Publicado: (2021)

DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencing
por: Helmersen, Karin, et al.
Publicado: (2020)

Can MLVA Differentiate among Endemic-Like MRSA Isolates with Identical Spa-Type in a Low-Prevalence Region?
por: Blomfeldt, Anita, et al.
Publicado: (2016)

Rapid diagnostics of orthopedic implant-associated infections using Unyvero ITI implant and tissue infection application is not optimal for Staphylococcus species identification
por: Aamot, Hege Vangstein, et al.
Publicado: (2019)

Investigation of intra-hospital SARS-CoV-2 transmission using nanopore whole-genome sequencing
por: Løvestad, A.H., et al.
Publicado: (2021)

Genotypic characterization of gentamicin and cephalosporin resistant Escherichia coli isolates from blood cultures in a Norwegian university hospital 2011–2015
por: Fladberg, Øyvind Andreas, et al.
Publicado: (2017)

Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections
por: Noone, J. Christopher, et al.
Publicado: (2021)

Tagmentation-based single-cell genomics
por: Adey, Andrew C.
Publicado: (2021)

Are conventional microbiological diagnostics sufficiently expedient in the era of rapid diagnostics? Evaluation of conventional microbiological diagnostics of orthopedic implant-associated infections (OIAI)
por: Aamot, Hege Vangstein, et al.
Publicado: (2020)

DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq
por: Krych, Łukasz, et al.
Publicado: (2019)

TM3’seq: A Tagmentation-Mediated 3’ Sequencing Approach for Improving Scalability of RNAseq Experiments
por: Pallares, Luisa F., et al.
Publicado: (2019)

Tadalafil has biologic activity in human melanoma. Results of a pilot trial with Tadalafil in patients with metastatic Melanoma (TaMe)
por: Hassel, Jessica C., et al.
Publicado: (2017)

Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies
por: Noone, J. Christopher, et al.
Publicado: (2021)

Rapid nanopore-based DNA sequencing protocol of antibiotic-resistant bacteria for use in surveillance and outbreak investigation
por: Ferreira, Fabienne Antunes, et al.
Publicado: (2021)

Transposase-assisted tagmentation of RNA/DNA hybrid duplexes
por: Lu, Bo, et al.
Publicado: (2020)

RNA sequencing by direct tagmentation of RNA/DNA hybrids
por: Di, Lin, et al.
Publicado: (2020)

Simplified Epigenome Profiling Using Antibody-tethered Tagmentation
por: Henikoff, Steven, et al.
Publicado: (2021)

A tale of two STs: molecular and clinical epidemiology of MRSA t304 in Norway 2008–2016
por: Enger, Hege, et al.
Publicado: (2021)

Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)
por: Carter, Benjamin, et al.
Publicado: (2019)

Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation
por: Henikoff, Steven, et al.
Publicado: (2020)

Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation
por: Khyzha, Nadiya, et al.
Publicado: (2022)

Molecular characteristics of Staphylococcus aureus associated prosthetic joint infections after hip fractures treated with hemiarthroplasty: a retrospective genome-wide association study
por: Noone, J. Christopher, et al.
Publicado: (2020)

Author Correction: Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)
por: Carter, Benjamin, et al.
Publicado: (2020)

Next-generation sequencing in routine clinical microbiology and infectious diseases: an ESGMD-ESGEM ESCMID postgraduate course
por: Aamot, Hege Vangstein, et al.
Publicado: (2022)

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
por: Adey, Andrew, et al.
Publicado: (2012)

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
por: Picelli, Simone, et al.
Publicado: (2014)

Reconstructing and counting genomic fragments through tagmentation-based haploid phasing
por: Leong, Patrick P. T., et al.
Publicado: (2021)

Self-collected and clinician-collected anal swabs show modest agreement for HPV genotyping
por: Dube Mandishora, Racheal S., et al.
Publicado: (2021)

Correction: Self-collected and clinician-collected anal swabs show modest agreement for HPV genotyping
por: Dube Mandishora, Racheal S., et al.
Publicado: (2023)

Early-Stage Staphylococcus aureus Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
por: Michalik, Stephan, et al.
Publicado: (2020)

HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization
por: Meisal, Roger, et al.
Publicado: (2017)

Intra-host sequence variability in human papillomavirus
por: Dube Mandishora, Racheal S., et al.
Publicado: (2018)

Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries
por: Crofts, Terence S., et al.
Publicado: (2021)

Selection of Flax Genotypes for Pan-Genomic Studies by Sequencing Tagmentation-Based Transcriptome Libraries
por: Pushkova, Elena N., et al.
Publicado: (2023)

Lessons learned: use of WGS in real-time investigation of suspected intrahospital SARS-CoV-2 outbreaks
por: Berggreen, H., et al.
Publicado: (2023)

Taming beams
Publicado: (1972)

Tame flows
por: Nicolaescu, Liviu I
Publicado: (2010)

Taming megalopolis,
Publicado: (1967)

Cannot write session to /tmp/vufind_sessions/sess_8u2itctn146pcdtlsrus54p9mm