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Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one

The title compound, C(30)H(33)N(4)O(2)F, can be obtained via a two-step synthetic scheme involving 1-benzyl-6-fluoro-4-oxo-7-(piperidin-1-yl)-1,4-di­hydro­quino­line-3-carbo­nitrile as a starting compound that undergoes substitution with hydroxyl­amine and subsequent cyclization with 4-methyl­cyclo­...

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Autores principales: Vaksler, Yevhenii, Hryhoriv, Halyna V., Ivanov, Vladimir V., Kovalenko, Sergiy M., Georgiyants, Victoriya A., Langer, Thierry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9993923/
https://www.ncbi.nlm.nih.gov/pubmed/36910005
http://dx.doi.org/10.1107/S2056989023001305
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author Vaksler, Yevhenii
Hryhoriv, Halyna V.
Ivanov, Vladimir V.
Kovalenko, Sergiy M.
Georgiyants, Victoriya A.
Langer, Thierry
author_facet Vaksler, Yevhenii
Hryhoriv, Halyna V.
Ivanov, Vladimir V.
Kovalenko, Sergiy M.
Georgiyants, Victoriya A.
Langer, Thierry
author_sort Vaksler, Yevhenii
collection PubMed
description The title compound, C(30)H(33)N(4)O(2)F, can be obtained via a two-step synthetic scheme involving 1-benzyl-6-fluoro-4-oxo-7-(piperidin-1-yl)-1,4-di­hydro­quino­line-3-carbo­nitrile as a starting compound that undergoes substitution with hydroxyl­amine and subsequent cyclization with 4-methyl­cyclo­hexane-1-carb­oxy­lic acid. It crystallizes from 2-propanol in the triclinic space group P [Image: see text] with a mol­ecule of the title compound and one of 2-propanol in the asymmetric unit. After the mol­ecular structure was clarified using NMR and LC/MS, the mol­ecular and crystalline arrangements were defined with SC-XRD. A Hirshfeld surface analysis was performed for a better understanding of the inter­molecular inter­actions. One strong (O—H⋯O) and three weak [C—H⋯F (intra­molecular) and two C—H⋯O] hydrogen bonds were found. The contributions of short contacts to the Hirshfeld surface were estimated using two-dimensional fingerprint plots showing that O⋯H/H⋯O, C⋯H/H⋯C and C⋯C contacts are the most significant for the title compound and O⋯H for the 2-propanol. The crystal structure appears to have isotropically packed tetra­mers containing two mol­ecules of the title compound and two mol­ecules of 2-propanol as the building unit according to analysis of the distribution of pairwise inter­action energies. A mol­ecular docking study was carried out to evaluate the inter­actions of the title compound with the active centers of macromolecules corresponding to viral targets, namely, anti-hepatitis B activity [HBV, capsid Y132A mutant (VCID 8772) PDB ID: 5E0I] and anti-COVID-19 main protease activity (PDB ID: 6LU7). The data obtained revealed a noticeable affinity towards them that exceeded that of the reference ligands.
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spelling pubmed-99939232023-03-09 Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one Vaksler, Yevhenii Hryhoriv, Halyna V. Ivanov, Vladimir V. Kovalenko, Sergiy M. Georgiyants, Victoriya A. Langer, Thierry Acta Crystallogr E Crystallogr Commun Research Communications The title compound, C(30)H(33)N(4)O(2)F, can be obtained via a two-step synthetic scheme involving 1-benzyl-6-fluoro-4-oxo-7-(piperidin-1-yl)-1,4-di­hydro­quino­line-3-carbo­nitrile as a starting compound that undergoes substitution with hydroxyl­amine and subsequent cyclization with 4-methyl­cyclo­hexane-1-carb­oxy­lic acid. It crystallizes from 2-propanol in the triclinic space group P [Image: see text] with a mol­ecule of the title compound and one of 2-propanol in the asymmetric unit. After the mol­ecular structure was clarified using NMR and LC/MS, the mol­ecular and crystalline arrangements were defined with SC-XRD. A Hirshfeld surface analysis was performed for a better understanding of the inter­molecular inter­actions. One strong (O—H⋯O) and three weak [C—H⋯F (intra­molecular) and two C—H⋯O] hydrogen bonds were found. The contributions of short contacts to the Hirshfeld surface were estimated using two-dimensional fingerprint plots showing that O⋯H/H⋯O, C⋯H/H⋯C and C⋯C contacts are the most significant for the title compound and O⋯H for the 2-propanol. The crystal structure appears to have isotropically packed tetra­mers containing two mol­ecules of the title compound and two mol­ecules of 2-propanol as the building unit according to analysis of the distribution of pairwise inter­action energies. A mol­ecular docking study was carried out to evaluate the inter­actions of the title compound with the active centers of macromolecules corresponding to viral targets, namely, anti-hepatitis B activity [HBV, capsid Y132A mutant (VCID 8772) PDB ID: 5E0I] and anti-COVID-19 main protease activity (PDB ID: 6LU7). The data obtained revealed a noticeable affinity towards them that exceeded that of the reference ligands. International Union of Crystallography 2023-02-21 /pmc/articles/PMC9993923/ /pubmed/36910005 http://dx.doi.org/10.1107/S2056989023001305 Text en © Vaksler et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Vaksler, Yevhenii
Hryhoriv, Halyna V.
Ivanov, Vladimir V.
Kovalenko, Sergiy M.
Georgiyants, Victoriya A.
Langer, Thierry
Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title_full Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title_fullStr Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title_full_unstemmed Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title_short Synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
title_sort synthesis, analysis of mol­ecular and crystal structures, estimation of inter­molecular inter­actions and biological properties of 1-benzyl-6-fluoro-3-[5-(4-methylcyclohexyl)-1,2,4-oxadiazol-3-yl]-7-(piperidin-1-yl)quinolin-4-one
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9993923/
https://www.ncbi.nlm.nih.gov/pubmed/36910005
http://dx.doi.org/10.1107/S2056989023001305
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