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Unrolled-DOT: an interpretable deep network for diffuse optical tomography

SIGNIFICANCE: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering medi...

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Autores principales: Zhao, Yongyi, Raghuram, Ankit, Wang, Fay, Kim, Stephen Hyunkeol, Hielscher, Andreas, Robinson, Jacob T., Veeraraghavan, Ashok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9995139/
https://www.ncbi.nlm.nih.gov/pubmed/36908760
http://dx.doi.org/10.1117/1.JBO.28.3.036002
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author Zhao, Yongyi
Raghuram, Ankit
Wang, Fay
Kim, Stephen Hyunkeol
Hielscher, Andreas
Robinson, Jacob T.
Veeraraghavan, Ashok
author_facet Zhao, Yongyi
Raghuram, Ankit
Wang, Fay
Kim, Stephen Hyunkeol
Hielscher, Andreas
Robinson, Jacob T.
Veeraraghavan, Ashok
author_sort Zhao, Yongyi
collection PubMed
description SIGNIFICANCE: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering media. ToF-DOT and many traditional DOT methods require an image reconstruction algorithm. Unfortunately, this algorithm often requires long computational runtimes and may produce lower quality reconstructions in the presence of model mismatch or improper hyperparameter tuning. AIM: We used a data-driven unrolled network as our ToF-DOT inverse solver. The unrolled network is faster than traditional inverse solvers and achieves higher reconstruction quality by accounting for model mismatch. APPROACH: Our model “Unrolled-DOT” uses the learned iterative shrinkage thresholding algorithm. In addition, we incorporate a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to further increase the reconstruction quality. We trained and tested our model on simulated and real-world data and benchmarked against physics-based and learning-based inverse solvers. RESULTS: In experiments on real-world data, Unrolled-DOT outperformed learning-based algorithms and achieved over 10× reduction in runtime and mean-squared error, compared to traditional physics-based solvers. CONCLUSION: We demonstrated a learning-based ToF-DOT inverse solver that achieves state-of-the-art performance in speed and reconstruction quality, which can aid in future applications for noninvasive biomedical imaging.
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spelling pubmed-99951392023-03-09 Unrolled-DOT: an interpretable deep network for diffuse optical tomography Zhao, Yongyi Raghuram, Ankit Wang, Fay Kim, Stephen Hyunkeol Hielscher, Andreas Robinson, Jacob T. Veeraraghavan, Ashok J Biomed Opt Imaging SIGNIFICANCE: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering media. ToF-DOT and many traditional DOT methods require an image reconstruction algorithm. Unfortunately, this algorithm often requires long computational runtimes and may produce lower quality reconstructions in the presence of model mismatch or improper hyperparameter tuning. AIM: We used a data-driven unrolled network as our ToF-DOT inverse solver. The unrolled network is faster than traditional inverse solvers and achieves higher reconstruction quality by accounting for model mismatch. APPROACH: Our model “Unrolled-DOT” uses the learned iterative shrinkage thresholding algorithm. In addition, we incorporate a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to further increase the reconstruction quality. We trained and tested our model on simulated and real-world data and benchmarked against physics-based and learning-based inverse solvers. RESULTS: In experiments on real-world data, Unrolled-DOT outperformed learning-based algorithms and achieved over 10× reduction in runtime and mean-squared error, compared to traditional physics-based solvers. CONCLUSION: We demonstrated a learning-based ToF-DOT inverse solver that achieves state-of-the-art performance in speed and reconstruction quality, which can aid in future applications for noninvasive biomedical imaging. Society of Photo-Optical Instrumentation Engineers 2023-03-08 2023-03 /pmc/articles/PMC9995139/ /pubmed/36908760 http://dx.doi.org/10.1117/1.JBO.28.3.036002 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Imaging
Zhao, Yongyi
Raghuram, Ankit
Wang, Fay
Kim, Stephen Hyunkeol
Hielscher, Andreas
Robinson, Jacob T.
Veeraraghavan, Ashok
Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title_full Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title_fullStr Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title_full_unstemmed Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title_short Unrolled-DOT: an interpretable deep network for diffuse optical tomography
title_sort unrolled-dot: an interpretable deep network for diffuse optical tomography
topic Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9995139/
https://www.ncbi.nlm.nih.gov/pubmed/36908760
http://dx.doi.org/10.1117/1.JBO.28.3.036002
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