Cargando…

Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis

BACKGROUND: Approximately 10% of cancer patients worldwide have colorectal cancer (CRC), a prevalent gastrointestinal malignancy with substantial mortality and morbidity. The purpose of this work was to investigate the APOC1 gene's expression patterns in the CRC tumor microenvironment and, usin...

Descripción completa

Detalles Bibliográficos
Autores principales: Tang, Weiwei, Liu, Hanyuan, Li, Xiao, Ooi, Theng Choon, Rajab, Nor Fadilah, Cao, Hongyong, Sharif, Razinah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9995190/
https://www.ncbi.nlm.nih.gov/pubmed/36908705
http://dx.doi.org/10.1155/2023/2611105
_version_ 1784902771083837440
author Tang, Weiwei
Liu, Hanyuan
Li, Xiao
Ooi, Theng Choon
Rajab, Nor Fadilah
Cao, Hongyong
Sharif, Razinah
author_facet Tang, Weiwei
Liu, Hanyuan
Li, Xiao
Ooi, Theng Choon
Rajab, Nor Fadilah
Cao, Hongyong
Sharif, Razinah
author_sort Tang, Weiwei
collection PubMed
description BACKGROUND: Approximately 10% of cancer patients worldwide have colorectal cancer (CRC), a prevalent gastrointestinal malignancy with substantial mortality and morbidity. The purpose of this work was to investigate the APOC1 gene's expression patterns in the CRC tumor microenvironment and, using the findings from bioinformatics, to assess the biological function of APOC1 in the development of CRC. METHODS: The TCGA portal was employed in this investigation to find APOC1 expression in CRC. Its correlation with other genes and clinicopathological data was examined using the UALCAN database. To validate APOC1's cellular location, the Human Protein was employed. In order to forecast the relationship between APOC1 expression and prognosis in CRC patients, the Kaplan–Meier plotter database was used. TISIDB was also employed to evaluate the connection between immune responses and APOC1 expression in CRC. The interactions of APOC1 with other proteins were predicted using STRING. In order to understand the factors that contribute to liver metastasis from CRC, single-cell RNA sequencing (scRNA-seq) was done on one patient who had the disease. This procedure included sampling preoperative blood and the main colorectal cancer tissues, surrounding colorectal cancer normal tissues, liver metastatic cancer tissues, and normal liver tissues. Finally, an in vitro knockdown method was used to assess how APOC1 expression in tumor-associated macrophages (TAMs) affected CRC cancer cell growth and migration. RESULTS: When compared to paracancerous tissues, APOC1 expression was considerably higher in CRC tissues. The clinicopathological stage and the prognosis of CRC patients had a positive correlation with APOC1 upregulation and a negative correlation, respectively. APOC1 proteins are mostly found in cell cytosols where they may interact with APOE, RAB42, and TREM2. APOC1 was also discovered to have a substantial relationship with immunoinhibitors (CD274, IDO1, and IL10) and immunostimulators (PVR, CD86, and ICOS). According to the results of scRNA-seq, we found that TAMs of CRC tissues had considerably more APOC1 than other cell groups. The proliferation and migration of CRC cells were impeded in vitro by APOC1 knockdown in TAMs. CONCLUSION: Based on scRNA-seq research, the current study shows that APOC1 was overexpressed in TAMs from CRC tissues. By inhibiting APOC1 in TAMs, CRC progression was reduced in vitro, offering a new tactic and giving CRC patients fresh hope.
format Online
Article
Text
id pubmed-9995190
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-99951902023-03-09 Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis Tang, Weiwei Liu, Hanyuan Li, Xiao Ooi, Theng Choon Rajab, Nor Fadilah Cao, Hongyong Sharif, Razinah J Oncol Research Article BACKGROUND: Approximately 10% of cancer patients worldwide have colorectal cancer (CRC), a prevalent gastrointestinal malignancy with substantial mortality and morbidity. The purpose of this work was to investigate the APOC1 gene's expression patterns in the CRC tumor microenvironment and, using the findings from bioinformatics, to assess the biological function of APOC1 in the development of CRC. METHODS: The TCGA portal was employed in this investigation to find APOC1 expression in CRC. Its correlation with other genes and clinicopathological data was examined using the UALCAN database. To validate APOC1's cellular location, the Human Protein was employed. In order to forecast the relationship between APOC1 expression and prognosis in CRC patients, the Kaplan–Meier plotter database was used. TISIDB was also employed to evaluate the connection between immune responses and APOC1 expression in CRC. The interactions of APOC1 with other proteins were predicted using STRING. In order to understand the factors that contribute to liver metastasis from CRC, single-cell RNA sequencing (scRNA-seq) was done on one patient who had the disease. This procedure included sampling preoperative blood and the main colorectal cancer tissues, surrounding colorectal cancer normal tissues, liver metastatic cancer tissues, and normal liver tissues. Finally, an in vitro knockdown method was used to assess how APOC1 expression in tumor-associated macrophages (TAMs) affected CRC cancer cell growth and migration. RESULTS: When compared to paracancerous tissues, APOC1 expression was considerably higher in CRC tissues. The clinicopathological stage and the prognosis of CRC patients had a positive correlation with APOC1 upregulation and a negative correlation, respectively. APOC1 proteins are mostly found in cell cytosols where they may interact with APOE, RAB42, and TREM2. APOC1 was also discovered to have a substantial relationship with immunoinhibitors (CD274, IDO1, and IL10) and immunostimulators (PVR, CD86, and ICOS). According to the results of scRNA-seq, we found that TAMs of CRC tissues had considerably more APOC1 than other cell groups. The proliferation and migration of CRC cells were impeded in vitro by APOC1 knockdown in TAMs. CONCLUSION: Based on scRNA-seq research, the current study shows that APOC1 was overexpressed in TAMs from CRC tissues. By inhibiting APOC1 in TAMs, CRC progression was reduced in vitro, offering a new tactic and giving CRC patients fresh hope. Hindawi 2023-03-01 /pmc/articles/PMC9995190/ /pubmed/36908705 http://dx.doi.org/10.1155/2023/2611105 Text en Copyright © 2023 Weiwei Tang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Tang, Weiwei
Liu, Hanyuan
Li, Xiao
Ooi, Theng Choon
Rajab, Nor Fadilah
Cao, Hongyong
Sharif, Razinah
Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title_full Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title_fullStr Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title_full_unstemmed Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title_short Upregulation of APOC1 Promotes Colorectal Cancer Progression and Serves as a Potential Therapeutic Target Based on Bioinformatics Analysis
title_sort upregulation of apoc1 promotes colorectal cancer progression and serves as a potential therapeutic target based on bioinformatics analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9995190/
https://www.ncbi.nlm.nih.gov/pubmed/36908705
http://dx.doi.org/10.1155/2023/2611105
work_keys_str_mv AT tangweiwei upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT liuhanyuan upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT lixiao upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT ooithengchoon upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT rajabnorfadilah upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT caohongyong upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis
AT sharifrazinah upregulationofapoc1promotescolorectalcancerprogressionandservesasapotentialtherapeutictargetbasedonbioinformaticsanalysis