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Genome sequence analysis of nsp15 from SARS-CoV-2

SARS-CoV-2 (Severe Acute Respiratory Syndrome), a causative agent of COVID-19 disease created a pandemic situation worldwide. Nsp15 is a uridine specific endoribonuclease encoded by the genome of SARS-CoV-2. It plays important role in processing viral RNA and, thus evades the host immune system. The...

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Autores principales: Yashvardhini, Niti, Jha, Deepak Kumar, Kumar, Amit, Gaurav, Manjush, Sayrav, Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997503/
https://www.ncbi.nlm.nih.gov/pubmed/36909703
http://dx.doi.org/10.6026/97320630018432
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author Yashvardhini, Niti
Jha, Deepak Kumar
Kumar, Amit
Gaurav, Manjush
Sayrav, Kumar
author_facet Yashvardhini, Niti
Jha, Deepak Kumar
Kumar, Amit
Gaurav, Manjush
Sayrav, Kumar
author_sort Yashvardhini, Niti
collection PubMed
description SARS-CoV-2 (Severe Acute Respiratory Syndrome), a causative agent of COVID-19 disease created a pandemic situation worldwide. Nsp15 is a uridine specific endoribonuclease encoded by the genome of SARS-CoV-2. It plays important role in processing viral RNA and, thus evades the host immune system. Therefore, it is of interest to identify mutants of nsp15 amongst Asian SARS-CoV-2 isolates, where a total of 1795 mutations, from 7793 sequences of Asia submitted till 31st January 2022, amongst which A231V, H234Y, K109N, K259R and S261A mutations were found frequent. Hence, we report data on the predicted secondary structure of wild type form followed by hydropathy plot, physiochemical properties, Ramachandran plot, B-cell epitopes prediction and protein modeling of wild type and mutant of nsp15 protein. Data shows that nsp15 of SARS-CoV-2 is a pontential candidate for the development of vaccine to control the infections of SARS-CoV-2.
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spelling pubmed-99975032023-03-10 Genome sequence analysis of nsp15 from SARS-CoV-2 Yashvardhini, Niti Jha, Deepak Kumar Kumar, Amit Gaurav, Manjush Sayrav, Kumar Bioinformation Research Article SARS-CoV-2 (Severe Acute Respiratory Syndrome), a causative agent of COVID-19 disease created a pandemic situation worldwide. Nsp15 is a uridine specific endoribonuclease encoded by the genome of SARS-CoV-2. It plays important role in processing viral RNA and, thus evades the host immune system. Therefore, it is of interest to identify mutants of nsp15 amongst Asian SARS-CoV-2 isolates, where a total of 1795 mutations, from 7793 sequences of Asia submitted till 31st January 2022, amongst which A231V, H234Y, K109N, K259R and S261A mutations were found frequent. Hence, we report data on the predicted secondary structure of wild type form followed by hydropathy plot, physiochemical properties, Ramachandran plot, B-cell epitopes prediction and protein modeling of wild type and mutant of nsp15 protein. Data shows that nsp15 of SARS-CoV-2 is a pontential candidate for the development of vaccine to control the infections of SARS-CoV-2. Biomedical Informatics 2022-04-30 /pmc/articles/PMC9997503/ /pubmed/36909703 http://dx.doi.org/10.6026/97320630018432 Text en © 2022 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Yashvardhini, Niti
Jha, Deepak Kumar
Kumar, Amit
Gaurav, Manjush
Sayrav, Kumar
Genome sequence analysis of nsp15 from SARS-CoV-2
title Genome sequence analysis of nsp15 from SARS-CoV-2
title_full Genome sequence analysis of nsp15 from SARS-CoV-2
title_fullStr Genome sequence analysis of nsp15 from SARS-CoV-2
title_full_unstemmed Genome sequence analysis of nsp15 from SARS-CoV-2
title_short Genome sequence analysis of nsp15 from SARS-CoV-2
title_sort genome sequence analysis of nsp15 from sars-cov-2
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997503/
https://www.ncbi.nlm.nih.gov/pubmed/36909703
http://dx.doi.org/10.6026/97320630018432
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