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Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method

PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer lea...

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Autores principales: Singh, Sandeep, Singh, Benoy Kumar, Kumar, Anuj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997534/
https://www.ncbi.nlm.nih.gov/pubmed/36908498
http://dx.doi.org/10.4103/jmp.jmp_52_22
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author Singh, Sandeep
Singh, Benoy Kumar
Kumar, Anuj
author_facet Singh, Sandeep
Singh, Benoy Kumar
Kumar, Anuj
author_sort Singh, Sandeep
collection PubMed
description PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer learning technique. MATERIALS AND METHODS: The dataset used for this study was obtained from the multimodal BraTS challenge. The total number of studies was 2240, obtained from BraTS 2018, BraTS 2019, BraTS 2020, and BraTS 2021 challenges, and each study had five series: T1, contrast-enhanced-T1, Flair, T2, and segmented mask file (seg), all in Neuroimaging Informatics Technology Initiative (NIFTI) format. The proposed method employs a 3D U-Net that was trained separately on each of the four datasets by transferring weights across them. RESULTS: The overall training accuracy, validation accuracy, mean dice coefficient, and mean intersection over union achieved were 99.35%, 98.93%, 0.9875%, and 0.8738%, respectively. CONCLUSION: The proposed method for tumor segmentation outperforms the existing method.
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spelling pubmed-99975342023-03-10 Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method Singh, Sandeep Singh, Benoy Kumar Kumar, Anuj J Med Phys Original Article PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer learning technique. MATERIALS AND METHODS: The dataset used for this study was obtained from the multimodal BraTS challenge. The total number of studies was 2240, obtained from BraTS 2018, BraTS 2019, BraTS 2020, and BraTS 2021 challenges, and each study had five series: T1, contrast-enhanced-T1, Flair, T2, and segmented mask file (seg), all in Neuroimaging Informatics Technology Initiative (NIFTI) format. The proposed method employs a 3D U-Net that was trained separately on each of the four datasets by transferring weights across them. RESULTS: The overall training accuracy, validation accuracy, mean dice coefficient, and mean intersection over union achieved were 99.35%, 98.93%, 0.9875%, and 0.8738%, respectively. CONCLUSION: The proposed method for tumor segmentation outperforms the existing method. Wolters Kluwer - Medknow 2022 2023-01-10 /pmc/articles/PMC9997534/ /pubmed/36908498 http://dx.doi.org/10.4103/jmp.jmp_52_22 Text en Copyright: © 2023 Journal of Medical Physics https://creativecommons.org/licenses/by-nc-sa/4.0/This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Original Article
Singh, Sandeep
Singh, Benoy Kumar
Kumar, Anuj
Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title_full Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title_fullStr Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title_full_unstemmed Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title_short Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
title_sort magnetic resonance imaging image-based segmentation of brain tumor using the modified transfer learning method
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997534/
https://www.ncbi.nlm.nih.gov/pubmed/36908498
http://dx.doi.org/10.4103/jmp.jmp_52_22
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