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Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method
PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer lea...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer - Medknow
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997534/ https://www.ncbi.nlm.nih.gov/pubmed/36908498 http://dx.doi.org/10.4103/jmp.jmp_52_22 |
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author | Singh, Sandeep Singh, Benoy Kumar Kumar, Anuj |
author_facet | Singh, Sandeep Singh, Benoy Kumar Kumar, Anuj |
author_sort | Singh, Sandeep |
collection | PubMed |
description | PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer learning technique. MATERIALS AND METHODS: The dataset used for this study was obtained from the multimodal BraTS challenge. The total number of studies was 2240, obtained from BraTS 2018, BraTS 2019, BraTS 2020, and BraTS 2021 challenges, and each study had five series: T1, contrast-enhanced-T1, Flair, T2, and segmented mask file (seg), all in Neuroimaging Informatics Technology Initiative (NIFTI) format. The proposed method employs a 3D U-Net that was trained separately on each of the four datasets by transferring weights across them. RESULTS: The overall training accuracy, validation accuracy, mean dice coefficient, and mean intersection over union achieved were 99.35%, 98.93%, 0.9875%, and 0.8738%, respectively. CONCLUSION: The proposed method for tumor segmentation outperforms the existing method. |
format | Online Article Text |
id | pubmed-9997534 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Wolters Kluwer - Medknow |
record_format | MEDLINE/PubMed |
spelling | pubmed-99975342023-03-10 Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method Singh, Sandeep Singh, Benoy Kumar Kumar, Anuj J Med Phys Original Article PURPOSE: The goal of this study was to improve overall brain tumor segmentation (BraTS) accuracy. In this study, a form of convolutional neural network called three-dimensional (3D) U-Net was utilized to segment various tumor regions on brain 3D magnetic resonance imaging images using a transfer learning technique. MATERIALS AND METHODS: The dataset used for this study was obtained from the multimodal BraTS challenge. The total number of studies was 2240, obtained from BraTS 2018, BraTS 2019, BraTS 2020, and BraTS 2021 challenges, and each study had five series: T1, contrast-enhanced-T1, Flair, T2, and segmented mask file (seg), all in Neuroimaging Informatics Technology Initiative (NIFTI) format. The proposed method employs a 3D U-Net that was trained separately on each of the four datasets by transferring weights across them. RESULTS: The overall training accuracy, validation accuracy, mean dice coefficient, and mean intersection over union achieved were 99.35%, 98.93%, 0.9875%, and 0.8738%, respectively. CONCLUSION: The proposed method for tumor segmentation outperforms the existing method. Wolters Kluwer - Medknow 2022 2023-01-10 /pmc/articles/PMC9997534/ /pubmed/36908498 http://dx.doi.org/10.4103/jmp.jmp_52_22 Text en Copyright: © 2023 Journal of Medical Physics https://creativecommons.org/licenses/by-nc-sa/4.0/This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Singh, Sandeep Singh, Benoy Kumar Kumar, Anuj Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title | Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title_full | Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title_fullStr | Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title_full_unstemmed | Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title_short | Magnetic Resonance Imaging Image-Based Segmentation of Brain Tumor Using the Modified Transfer Learning Method |
title_sort | magnetic resonance imaging image-based segmentation of brain tumor using the modified transfer learning method |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997534/ https://www.ncbi.nlm.nih.gov/pubmed/36908498 http://dx.doi.org/10.4103/jmp.jmp_52_22 |
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