Cargando…

Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae

Oxford Nanopore Technologies (ONT) sequencing has rich potential for genomic epidemiology and public health investigations of bacterial pathogens, particularly in low-resource settings and at the point of care, due to its portability and affordability. However, low base-call accuracy has limited the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Foster-Nyarko, Ebenezer, Cottingham, Hugh, Wick, Ryan R., Judd, Louise M., Lam, Margaret M. C., Wyres, Kelly L., Stanton, Thomas D., Tsang, Kara K., David, Sophia, Aanensen, David M., Brisse, Sylvain, Holt, Kathryn E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Microbiology Society 2023
Materias:	Research Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997738/ https://www.ncbi.nlm.nih.gov/pubmed/36752781 http://dx.doi.org/10.1099/mgen.0.000936

Ejemplares similares

Corrigendum: ‘Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae’
por: Foster-Nyarko, Ebenezer, et al.
Publicado: (2023)

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
por: Lam, Margaret M. C., et al.
Publicado: (2018)

Linear plasmids in Klebsiella and other Enterobacteriaceae
por: Hawkey, Jane, et al.
Publicado: (2022)

Recovery of small plasmid sequences via Oxford Nanopore sequencing
por: Wick, Ryan R., et al.
Publicado: (2021)

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
por: Lam, Margaret M. C., et al.
Publicado: (2018)

Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex
por: Lam, Margaret M. C., et al.
Publicado: (2022)

A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality
por: Hawkey, Jane, et al.
Publicado: (2022)

Transmission of Klebsiella strains and plasmids within and between grey‐headed flying fox colonies
por: Vezina, Ben, et al.
Publicado: (2022)

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
por: Lam, Margaret M. C., et al.
Publicado: (2018)

Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15
por: Lam, Margaret M C, et al.
Publicado: (2019)

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting
por: Hawkey, Jane, et al.
Publicado: (2022)

Performance of neural network basecalling tools for Oxford Nanopore sequencing
por: Wick, Ryan R., et al.
Publicado: (2019)

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
por: Wick, Ryan R., et al.
Publicado: (2018)

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
por: Wick, Ryan R., et al.
Publicado: (2023)

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
por: Wick, Ryan R., et al.
Publicado: (2018)

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
por: Wyres, Kelly L., et al.
Publicado: (2019)

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia
por: Stewart, James, et al.
Publicado: (2022)

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
por: Wyres, Kelly L, et al.
Publicado: (2019)

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
por: Lam, Margaret M. C., et al.
Publicado: (2021)

Identification of Klebsiella capsule synthesis loci from whole genome data
por: Wyres, Kelly L., et al.
Publicado: (2016)

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry
por: Rodrigues, Carla, et al.
Publicado: (2018)

Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch
por: Argimón, Silvia, et al.
Publicado: (2021)

Comment on: MDR carbapenemase-producing Klebsiella pneumoniae of the hypervirulence-associated ST23 clone in Poland, 2009–19
por: Lam, Margaret M C, et al.
Publicado: (2023)

Comment on: CG258 Klebsiella pneumoniae isolates without β-lactam resistance at the onset of the carbapenem-resistant Enterobacteriaceae epidemic in New York City
por: Wyres, Kelly L, et al.
Publicado: (2019)

The diversity of Klebsiella pneumoniae surface polysaccharides
por: Follador, Rainer, et al.
Publicado: (2016)

Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital
por: Gorrie, Claire L, et al.
Publicado: (2018)

Trycycler: consensus long-read assemblies for bacterial genomes
por: Wick, Ryan R., et al.
Publicado: (2021)

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen
por: Gorrie, Claire L., et al.
Publicado: (2022)

Rapid Nanopore Assay for Carbapenem-Resistant Klebsiella pneumoniae
por: Niu, Haofu, et al.
Publicado: (2019)

Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147
por: Rodrigues, Carla, et al.
Publicado: (2022)

Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods
por: Lindstedt, Kenneth, et al.
Publicado: (2022)

Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2
por: Mak, Q X Charles, et al.
Publicado: (2023)

Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae
por: Martin, Rebekah M., et al.
Publicado: (2016)

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
por: Merla, Cristina, et al.
Publicado: (2019)

Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810 and Reference Strain Tohama from Combined Oxford Nanopore and Illumina Sequencing
por: Bouchez, Valérie, et al.
Publicado: (2018)

Liver Abscess Caused by Infection with Community-Acquired Klebsiella quasipneumoniae subsp. quasipneumoniae
por: Breurec, Sebastien, et al.
Publicado: (2016)

In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization
por: Khater, Fida, et al.
Publicado: (2015)

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales
por: Holt, Kathryn E., et al.
Publicado: (2020)

Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales
por: Holt, Kathryn E., et al.
Publicado: (2022)

The microbial ecology of Escherichia coli in the vertebrate gut
por: Foster-Nyarko, Ebenezer, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_8f4pnrbgmi0bj9euo197icauk3