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Not getting in too deep: A practical deep learning approach to routine crystallisation image classification

Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive comput...

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Detalles Bibliográficos
Autores principales: Milne, Jamie, Qian, Chen, Hargreaves, David, Wang, Yinhai, Wilson, Julie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997964/
https://www.ncbi.nlm.nih.gov/pubmed/36893084
http://dx.doi.org/10.1371/journal.pone.0282562
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author Milne, Jamie
Qian, Chen
Hargreaves, David
Wang, Yinhai
Wilson, Julie
author_facet Milne, Jamie
Qian, Chen
Hargreaves, David
Wang, Yinhai
Wilson, Julie
author_sort Milne, Jamie
collection PubMed
description Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive computational resources. We show that the classifiers have different strengths that can be combined to provide an ensemble classifier achieving a classification accuracy comparable to that obtained by a large consortium initiative. We use eight classes to effectively rank the experimental outcomes, thereby providing detailed information that can be used with routine crystallography experiments to automatically identify crystal formation for drug discovery and pave the way for further exploration of the relationship between crystal formation and crystallisation conditions.
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spelling pubmed-99979642023-03-10 Not getting in too deep: A practical deep learning approach to routine crystallisation image classification Milne, Jamie Qian, Chen Hargreaves, David Wang, Yinhai Wilson, Julie PLoS One Research Article Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive computational resources. We show that the classifiers have different strengths that can be combined to provide an ensemble classifier achieving a classification accuracy comparable to that obtained by a large consortium initiative. We use eight classes to effectively rank the experimental outcomes, thereby providing detailed information that can be used with routine crystallography experiments to automatically identify crystal formation for drug discovery and pave the way for further exploration of the relationship between crystal formation and crystallisation conditions. Public Library of Science 2023-03-09 /pmc/articles/PMC9997964/ /pubmed/36893084 http://dx.doi.org/10.1371/journal.pone.0282562 Text en © 2023 Milne et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Milne, Jamie
Qian, Chen
Hargreaves, David
Wang, Yinhai
Wilson, Julie
Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title_full Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title_fullStr Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title_full_unstemmed Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title_short Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
title_sort not getting in too deep: a practical deep learning approach to routine crystallisation image classification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997964/
https://www.ncbi.nlm.nih.gov/pubmed/36893084
http://dx.doi.org/10.1371/journal.pone.0282562
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