Cargando…
Not getting in too deep: A practical deep learning approach to routine crystallisation image classification
Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive comput...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997964/ https://www.ncbi.nlm.nih.gov/pubmed/36893084 http://dx.doi.org/10.1371/journal.pone.0282562 |
_version_ | 1784903370586193920 |
---|---|
author | Milne, Jamie Qian, Chen Hargreaves, David Wang, Yinhai Wilson, Julie |
author_facet | Milne, Jamie Qian, Chen Hargreaves, David Wang, Yinhai Wilson, Julie |
author_sort | Milne, Jamie |
collection | PubMed |
description | Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive computational resources. We show that the classifiers have different strengths that can be combined to provide an ensemble classifier achieving a classification accuracy comparable to that obtained by a large consortium initiative. We use eight classes to effectively rank the experimental outcomes, thereby providing detailed information that can be used with routine crystallography experiments to automatically identify crystal formation for drug discovery and pave the way for further exploration of the relationship between crystal formation and crystallisation conditions. |
format | Online Article Text |
id | pubmed-9997964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-99979642023-03-10 Not getting in too deep: A practical deep learning approach to routine crystallisation image classification Milne, Jamie Qian, Chen Hargreaves, David Wang, Yinhai Wilson, Julie PLoS One Research Article Using a relatively small training set of (~)16 thousand images from macromolecular crystallisation experiments, we compare classification results obtained with four of the most widely-used convolutional deep-learning network architectures that can be implemented without the need for extensive computational resources. We show that the classifiers have different strengths that can be combined to provide an ensemble classifier achieving a classification accuracy comparable to that obtained by a large consortium initiative. We use eight classes to effectively rank the experimental outcomes, thereby providing detailed information that can be used with routine crystallography experiments to automatically identify crystal formation for drug discovery and pave the way for further exploration of the relationship between crystal formation and crystallisation conditions. Public Library of Science 2023-03-09 /pmc/articles/PMC9997964/ /pubmed/36893084 http://dx.doi.org/10.1371/journal.pone.0282562 Text en © 2023 Milne et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Milne, Jamie Qian, Chen Hargreaves, David Wang, Yinhai Wilson, Julie Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title | Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title_full | Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title_fullStr | Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title_full_unstemmed | Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title_short | Not getting in too deep: A practical deep learning approach to routine crystallisation image classification |
title_sort | not getting in too deep: a practical deep learning approach to routine crystallisation image classification |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9997964/ https://www.ncbi.nlm.nih.gov/pubmed/36893084 http://dx.doi.org/10.1371/journal.pone.0282562 |
work_keys_str_mv | AT milnejamie notgettingintoodeepapracticaldeeplearningapproachtoroutinecrystallisationimageclassification AT qianchen notgettingintoodeepapracticaldeeplearningapproachtoroutinecrystallisationimageclassification AT hargreavesdavid notgettingintoodeepapracticaldeeplearningapproachtoroutinecrystallisationimageclassification AT wangyinhai notgettingintoodeepapracticaldeeplearningapproachtoroutinecrystallisationimageclassification AT wilsonjulie notgettingintoodeepapracticaldeeplearningapproachtoroutinecrystallisationimageclassification |