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The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma

Adrenocortical carcinoma (ACC) has a low incidence but a poor prognosis. And ACC has complex clinical manifestations and limited treatment. Pyroptosis has a dual character and has both positive and negative effects on cancer. However, the role of pyroptosis-related genes (PRGs) in ACC and the impact...

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Autores principales: Gao, Jun, Wang, Dai, Yang, Qingping, Tang, Mengjie, Du, Jiayi, He, Leye, Liu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9998516/
https://www.ncbi.nlm.nih.gov/pubmed/36911522
http://dx.doi.org/10.3389/fmolb.2023.1131402
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author Gao, Jun
Wang, Dai
Yang, Qingping
Tang, Mengjie
Du, Jiayi
He, Leye
Liu, Wei
author_facet Gao, Jun
Wang, Dai
Yang, Qingping
Tang, Mengjie
Du, Jiayi
He, Leye
Liu, Wei
author_sort Gao, Jun
collection PubMed
description Adrenocortical carcinoma (ACC) has a low incidence but a poor prognosis. And ACC has complex clinical manifestations and limited treatment. Pyroptosis has a dual character and has both positive and negative effects on cancer. However, the role of pyroptosis-related genes (PRGs) in ACC and the impact on ACC progression remains unelucidated. This study performed systematic bioinformatics analysis and basic experimental validation to enable the establishment of prognostic models and demonstrate levels of immune infiltration. Pearson’s correlation analysis was used to assess the association of PRGs with tumor immune infiltration, tumor mutation burden (TMB), microsatellite instability (MSI), and immune checkpoints. There 4 PRGs were upregulated, and 25 PRGs were downregulated in ACC. At the same time, we analyzed and reviewed the genetic mutation variation landscape of PRGs. Functional enrichment analysis was also performed to clarify the function of PRGs. Pyroptosis, the inflammatory response, the Toll-like receptor signaling pathway, and the NOD-like receptor signaling pathway are the functions and pathways mainly involved and exerted effects by these 33 PRGs. The results of the prognosis analysis revealed high expression of CASP3, CASP9, GSDMB, GSDMD, NLRC4, PRKACA, and SCAF11 caused a poor survival rate for ACC patients. The above seven PRGs were screened by the optimal λ value of LASSO Cox analysis, and the five selected genes (CASP3, CASP9, GSDMB, GSDMD, NLRC4) were involved in constructing a prognostic PRGs model which enables the overall survival in ACC patients can be predicted with moderate to high accuracy. Prognostic PRGs, especially CASP9, which is the independent factor of ACC prognosis, may be closely correlated with immune-cell infiltration, tumor mutation burden, microsatellite instability, and immune checkpoints. Quantitative Real-Time PCR (qRT-PCR), Western blot and immunohistochemical were performed to validate the mRNA expression levels of CASP9 in adjacent normal tissues and ACC tissues. According to the result of immune checkpoints analysis, NLRC4 and GSDMB may be identified as potential therapeutic targets. In conclusion, we established a prognostic model of PRG characteristics in ACC and analyzed the relationship between PRGs and immune infiltration. Through our study, it may be helpful to find the mechanism of pyroptosis in ACC.
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spelling pubmed-99985162023-03-11 The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma Gao, Jun Wang, Dai Yang, Qingping Tang, Mengjie Du, Jiayi He, Leye Liu, Wei Front Mol Biosci Molecular Biosciences Adrenocortical carcinoma (ACC) has a low incidence but a poor prognosis. And ACC has complex clinical manifestations and limited treatment. Pyroptosis has a dual character and has both positive and negative effects on cancer. However, the role of pyroptosis-related genes (PRGs) in ACC and the impact on ACC progression remains unelucidated. This study performed systematic bioinformatics analysis and basic experimental validation to enable the establishment of prognostic models and demonstrate levels of immune infiltration. Pearson’s correlation analysis was used to assess the association of PRGs with tumor immune infiltration, tumor mutation burden (TMB), microsatellite instability (MSI), and immune checkpoints. There 4 PRGs were upregulated, and 25 PRGs were downregulated in ACC. At the same time, we analyzed and reviewed the genetic mutation variation landscape of PRGs. Functional enrichment analysis was also performed to clarify the function of PRGs. Pyroptosis, the inflammatory response, the Toll-like receptor signaling pathway, and the NOD-like receptor signaling pathway are the functions and pathways mainly involved and exerted effects by these 33 PRGs. The results of the prognosis analysis revealed high expression of CASP3, CASP9, GSDMB, GSDMD, NLRC4, PRKACA, and SCAF11 caused a poor survival rate for ACC patients. The above seven PRGs were screened by the optimal λ value of LASSO Cox analysis, and the five selected genes (CASP3, CASP9, GSDMB, GSDMD, NLRC4) were involved in constructing a prognostic PRGs model which enables the overall survival in ACC patients can be predicted with moderate to high accuracy. Prognostic PRGs, especially CASP9, which is the independent factor of ACC prognosis, may be closely correlated with immune-cell infiltration, tumor mutation burden, microsatellite instability, and immune checkpoints. Quantitative Real-Time PCR (qRT-PCR), Western blot and immunohistochemical were performed to validate the mRNA expression levels of CASP9 in adjacent normal tissues and ACC tissues. According to the result of immune checkpoints analysis, NLRC4 and GSDMB may be identified as potential therapeutic targets. In conclusion, we established a prognostic model of PRG characteristics in ACC and analyzed the relationship between PRGs and immune infiltration. Through our study, it may be helpful to find the mechanism of pyroptosis in ACC. Frontiers Media S.A. 2023-02-24 /pmc/articles/PMC9998516/ /pubmed/36911522 http://dx.doi.org/10.3389/fmolb.2023.1131402 Text en Copyright © 2023 Gao, Wang, Yang, Tang, Du, He and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Gao, Jun
Wang, Dai
Yang, Qingping
Tang, Mengjie
Du, Jiayi
He, Leye
Liu, Wei
The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title_full The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title_fullStr The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title_full_unstemmed The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title_short The signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
title_sort signature of pyroptosis-related gene prognostic and immune microenvironment in adrenocortical carcinoma
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9998516/
https://www.ncbi.nlm.nih.gov/pubmed/36911522
http://dx.doi.org/10.3389/fmolb.2023.1131402
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