Cargando…

Improved computations for relationship inference using low-coverage sequencing data

Pedigree inference, for example determining whether two persons are second cousins or unrelated, can be done by comparing their genotypes at a selection of genetic markers. When the data for one or more of the persons is from low-coverage next generation sequencing (lcNGS), currently available compu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mostad, Petter, Tillmar, Andreas, Kling, Daniel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9999603/ https://www.ncbi.nlm.nih.gov/pubmed/36894920 http://dx.doi.org/10.1186/s12859-023-05217-z

Ejemplares similares

Response to: DNA identification by pedigree likelihood ratio accommodating population substructure and mutations
por: Egeland, Thore, et al.
Publicado: (2011)

Using Object Oriented Bayesian Networks to Model Linkage, Linkage Disequilibrium and Mutations between STR Markers
por: Kling, Daniel, et al.
Publicado: (2012)

AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data
por: Schaefer, Nathan K., et al.
Publicado: (2017)

A novel nonlinear dimension reduction approach to infer population structure for low-coverage sequencing data
por: Zhang, Miao, et al.
Publicado: (2021)

Powerful Inference with the D-Statistic on Low-Coverage Whole-Genome Data
por: Soraggi, Samuele, et al.
Publicado: (2017)

Inferring Heterozygosity from Ancient and Low Coverage Genomes
por: Kousathanas, Athanasios, et al.
Publicado: (2017)

Mathematically optimal decisions in forensic age assessment
por: Mostad, Petter, et al.
Publicado: (2021)

Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state
por: Fletcher, Kyle, et al.
Publicado: (2022)

Accucopy: accurate and fast inference of allele-specific copy number alterations from low-coverage low-purity tumor sequencing data
por: Fan, Xinping, et al.
Publicado: (2021)

Fast imputation using medium or low-coverage sequence data
por: VanRaden, Paul M., et al.
Publicado: (2015)

Error rates for unvalidated medical age assessment procedures
por: Mostad, Petter, et al.
Publicado: (2018)

DNA identification of compromised samples with massive parallel sequencing
por: Tillmar, Andreas, et al.
Publicado: (2018)

An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
por: Zhang, Jin, et al.
Publicado: (2012)

Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
por: Yang, Ya, et al.
Publicado: (2014)

Empirical Bayes models for multiple probe type microarrays at the probe level
por: Åstrand, Magnus, et al.
Publicado: (2008)

HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
por: Larsson, Erik, et al.
Publicado: (2007)

Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data
por: Waples, Ryan K., et al.
Publicado: (2019)

MetaCNV - a consensus approach to infer accurate copy numbers from low coverage data
por: Friedrich, Stefanie, et al.
Publicado: (2020)

A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data
por: Nguyen, Remy, et al.
Publicado: (2023)

Applying Unique Molecular Indices with an Extensive All-in-One Forensic SNP Panel for Improved Genotype Accuracy and Sensitivity
por: Staadig, Adam, et al.
Publicado: (2023)

Improved DNA Extraction and Illumina Sequencing of DNA Recovered from Aged Rootless Hair Shafts Found in Relics Associated with the Romanov Family
por: Loreille, Odile, et al.
Publicado: (2022)

Comparing a few SNP calling algorithms using low-coverage sequencing data
por: Yu, Xiaoqing, et al.
Publicado: (2013)

Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data
por: Bilton, Timothy P., et al.
Publicado: (2018)

KIN: a method to infer relatedness from low-coverage ancient DNA
por: Popli, Divyaratan, et al.
Publicado: (2023)

Detecting selection in low-coverage high-throughput sequencing data using principal component analysis
por: Meisner, Jonas, et al.
Publicado: (2021)

Inferring biological kinship in ancient datasets: comparing the response of ancient DNA-specific software packages to low coverage data
por: Marsh, William A, et al.
Publicado: (2023)

High-precision high-coverage functional inference from integrated data sources
por: Linghu, Bolan, et al.
Publicado: (2008)

Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data
por: Delomas, Thomas A., et al.
Publicado: (2023)

Genomic prediction using low-coverage portable Nanopore sequencing
por: Lamb, Harrison J., et al.
Publicado: (2021)

A Universal Method for Species Identification of Mammals Utilizing Next Generation Sequencing for the Analysis of DNA Mixtures
por: Tillmar, Andreas O., et al.
Publicado: (2013)

Phylogenomics with incomplete taxon coverage: the limits to inference
por: Sanderson, Michael J, et al.
Publicado: (2010)

Inferring the Direction of Introgression Using Genomic Sequence Data
por: Thawornwattana, Yuttapong, et al.
Publicado: (2023)

Using Sequence Data To Infer the Antigenicity of Influenza Virus
por: Sun, Hailiang, et al.
Publicado: (2013)

The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic
por: Lam, Anthony, et al.
Publicado: (2021)

Evaluation of microhaplotypes in forensic kinship analysis from a Swedish population perspective
por: Staadig, Adam, et al.
Publicado: (2021)

Computational methods for analysis and inference of kinase/inhibitor relationships
por: Ferrè, Fabrizio, et al.
Publicado: (2014)

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data
por: Hong, Changjin, et al.
Publicado: (2013)

Imputation of low-coverage sequencing data from 150,119 UK Biobank genomes
por: Rubinacci, Simone, et al.
Publicado: (2023)

Comparison of Genotype Imputation for SNP Array and Low-Coverage Whole-Genome Sequencing Data
por: Deng, Tianyu, et al.
Publicado: (2022)

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data
por: Söylev, Arda, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_s20fft7e6pgm97cndm7d9pcm4f